Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00159
         (766 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    30   0.021
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    28   0.11 
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   5.4  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   7.2  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   7.2  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           21   9.5  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           21   9.5  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 30.3 bits (65), Expect = 0.021
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +1

Query: 250 LISLPTEIGNLKNLVNLNLSYNPLNVLIPEIGDLEKLEAFWCNRIG 387
           ++S+  E+GN   +V +N S NP+ V + ++     L  + CN +G
Sbjct: 495 VLSVKRELGNDTVIVMMNFSKNPVTVNLTKLHPPADLVVYACNVVG 540


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 27.9 bits (59), Expect = 0.11
 Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 2/99 (2%)
 Frame = +1

Query: 223 NNAYSRLQ*LISLPTEIGNLKNLVNLNLSYNPLNVLIPEI-GDLEKLEAFWCNRIGLKEI 399
           NN+  R++    LP     L NL  L LS N L  +  ++   L  L     +   +  I
Sbjct: 368 NNSIDRIESNAFLP-----LYNLHTLELSDNKLRTVGAQLFNGLFVLNRLTLSGNAIASI 422

Query: 400 -PKEIGKLTQLDTFGARGNELKTIPEEMTSLAKLRWLSL 513
            P      + L      GNEL ++P+ +  LA L+ L L
Sbjct: 423 DPLAFRNCSDLKELDLSGNELTSVPDALRDLALLKTLDL 461



 Score = 25.0 bits (52), Expect = 0.77
 Identities = 9/37 (24%), Positives = 21/37 (56%)
 Frame = +3

Query: 495 IEMVELENNQIETLPDTMDRMTALVHCNLRNNRLEQF 605
           ++ ++L  N++ ++PD +  +  L   +L  NR+  F
Sbjct: 433 LKELDLSGNELTSVPDALRDLALLKTLDLGENRISNF 469



 Score = 24.6 bits (51), Expect = 1.0
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 92  LSLNGFEITEIPGLLYTCLEVEHLYLHKNKISVF 193
           L L+G E+T +P  L     ++ L L +N+IS F
Sbjct: 436 LDLSGNELTSVPDALRDLALLKTLDLGENRISNF 469


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 402 RYLFQTYSITPERFQLLQ 349
           R+LF+T S TPE  Q L+
Sbjct: 271 RHLFRTASSTPEDLQDLE 288


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 361 PASPDHRFPGSKHL 320
           P  P+H   GSKHL
Sbjct: 96  PYPPNHPLSGSKHL 109


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 361 PASPDHRFPGSKHL 320
           P  P+H   GSKHL
Sbjct: 96  PYPPNHPLSGSKHL 109


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 379 YYTRTLPASPDHRFPGSKHLM 317
           Y  +  P +P+H+ PG K L+
Sbjct: 58  YNFQLKPYNPEHKPPGPKDLV 78


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 379 YYTRTLPASPDHRFPGSKHLM 317
           Y  +  P +P+H+ PG K L+
Sbjct: 59  YNFQLKPYNPEHKPPGPKDLV 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,651
Number of Sequences: 438
Number of extensions: 3663
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)