Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00156
(672 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc... 93 3e-20
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 57 3e-09
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch... 37 0.003
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc... 34 0.016
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce... 27 1.9
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom... 27 2.5
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca... 27 3.3
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe... 26 4.3
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 26 4.3
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc... 26 5.7
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei... 26 5.7
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 26 5.7
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 25 7.5
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro... 25 7.5
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 25 9.9
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr... 25 9.9
>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 878
Score = 93.1 bits (221), Expect = 3e-20
Identities = 46/89 (51%), Positives = 61/89 (68%)
Frame = +2
Query: 26 EIKRINKELANIRSKFKGDKTLDGYQKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNKC 205
E KR+N ELA IR+KF+ TL Y +KKYV KLL+I++LG+ I FGHMEA LLS K
Sbjct: 25 EEKRVNVELAKIRAKFQSS-TLSAYDRKKYVSKLLYIYMLGYPITFGHMEAAKLLSGTKY 83
Query: 206 SEKQIGYLFISVLVNTTVTSLNLSFRALK 292
SEK IGYL +++L+N + L ++K
Sbjct: 84 SEKLIGYLAVALLLNENHELMKLVINSIK 112
Score = 72.5 bits (170), Expect = 5e-14
Identities = 36/82 (43%), Positives = 55/82 (67%)
Frame = +1
Query: 259 DLIKLIIQSIKNDLQSRNPIHVNLALQCIANIGSKDMAEAFGTEIPKLLVSGDTMDVVKQ 438
+L+KL+I SIK DL S + + +LAL IANIG +++ E +I KLL+S ++V+Q
Sbjct: 102 ELMKLVINSIKKDLLSHDSLQNSLALHTIANIGGRELCETVYYDIYKLLMSASNENIVRQ 161
Query: 439 SAALCLLRLFRKSPEIIPGGEW 504
+AL LL ++RK P++I EW
Sbjct: 162 KSALALLHIYRKFPDLI-NPEW 182
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 56.8 bits (131), Expect = 3e-09
Identities = 34/97 (35%), Positives = 52/97 (53%)
Frame = +2
Query: 2 RNCKSKEAEIKRINKELANIRSKFKGDKTLDGYQKKKYVCKLLFIFLLGHDIDFGHMEAV 181
R K+ E I KE A IR + D ++K V KLL++FLLG FG +E +
Sbjct: 41 RASKTTAEEHTTILKESAQIRKNIRQGSN-DMRMRRKNVAKLLYLFLLGEPTHFGQIECL 99
Query: 182 NLLSSNKCSEKQIGYLFISVLVNTTVTSLNLSFRALK 292
LLSS++ +K++GYL +L++ L L +L+
Sbjct: 100 KLLSSSRFMDKRLGYLAAMLLLDENQEVLTLLTNSLQ 136
Score = 48.4 bits (110), Expect = 9e-07
Identities = 22/78 (28%), Positives = 44/78 (56%)
Frame = +1
Query: 253 HSDLIKLIIQSIKNDLQSRNPIHVNLALQCIANIGSKDMAEAFGTEIPKLLVSGDTMDVV 432
+ +++ L+ S++NDL+SR+ V LAL N+ ++A +I +L + + +
Sbjct: 124 NQEVLTLLTNSLQNDLKSRDKFIVGLALSAFGNVAGPELARDLSNDIAEL--CSNHHNYI 181
Query: 433 KQSAALCLLRLFRKSPEI 486
+ A LC LR+ +K P++
Sbjct: 182 SKKAVLCALRVIQKEPDL 199
>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 36.7 bits (81), Expect = 0.003
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = +2
Query: 92 DGYQKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNKCSEKQIGYL 229
D K + + KL ++ +LG DI + + V ++SS+K +KQ GYL
Sbjct: 40 DADLKSEAILKLAYLEMLGVDISWASFQIVEVMSSSKILQKQKGYL 85
>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 677
Score = 34.3 bits (75), Expect = 0.016
Identities = 21/74 (28%), Positives = 42/74 (56%)
Frame = +1
Query: 268 KLIIQSIKNDLQSRNPIHVNLALQCIANIGSKDMAEAFGTEIPKLLVSGDTMDVVKQSAA 447
K ++ I ND+ S NP+ +LAL+ + ++ K+ A I +LL DT V+++AA
Sbjct: 86 KRAVKLILNDIYSSNPMIRSLALRTLTSVNIKNFWVAAMDPIVRLL--DDTDPYVRKTAA 143
Query: 448 LCLLRLFRKSPEII 489
+ + +L+ +++
Sbjct: 144 IGIAKLYSYDKKMV 157
>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 610
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +3
Query: 75 RVIKL*MDIKRRSMCVNFCLYFCSDMISTSGTWKQ*TYFHPINAPKNRLDTF 230
R+++L +D R+S+C FC D + W YF+ + + +LD F
Sbjct: 311 RILRLVLDDSRKSVCFGFCYV---DTLKILQKWGSGCYFYGLGNDE-QLDEF 358
>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 986
Score = 27.1 bits (57), Expect = 2.5
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +3
Query: 459 SLISQIS*DNTWRRVDFRIIHLLNDPHMGVVTAATSLIDALVKKN 593
SLI+ + + W V ++HLL + + A+ ++D LV ++
Sbjct: 115 SLIANVDYPDEWPEVVPAVLHLLQSTNENSINASLDVLDELVDES 159
>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
cancers-1 homolog 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 676
Score = 26.6 bits (56), Expect = 3.3
Identities = 26/68 (38%), Positives = 32/68 (47%)
Frame = +2
Query: 38 INKELANIRSKFKGDKTLDGYQKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNKCSEKQ 217
INK L+N K + T G K+ V L F+FLL + E VN SSN E
Sbjct: 326 INKFLSNPLKKERQIITFMGDFKRCVVESLCFLFLLLTNQPRFTDELVNFKSSN---EMM 382
Query: 218 IGYLFISV 241
+ LFI V
Sbjct: 383 MNLLFIHV 390
>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 738
Score = 26.2 bits (55), Expect = 4.3
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = -1
Query: 543 PYGGHSKDELCESP--LSSRYYLRRFAK*AKEAKCSRLFHYIHGITRDKKFGYFS 385
P+ S++ +P ++ ++LR +A+ A S L H IHG+ ++ G S
Sbjct: 452 PFNRKSRNRSFTNPVGMTEEHFLREYAQ-HSVANPSLLIHQIHGLPSEQVHGLLS 505
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 26.2 bits (55), Expect = 4.3
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 338 NVLPTLVAKIWLKLLVLKYP 397
+++PT VA W+K+L +YP
Sbjct: 258 DLVPTSVAAAWVKILAKEYP 277
>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 25.8 bits (54), Expect = 5.7
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = -3
Query: 496 LQVLSQE---ICEISEGGKVQQIVSLHPWYHQRQEVWVF 389
LQ L ++ +CE S+G + ++ HP Y R V++F
Sbjct: 54 LQALKEKNYFVCEKSDGIRCLLYMTEHPRYENRPSVYLF 92
>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 945
Score = 25.8 bits (54), Expect = 5.7
Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Frame = -2
Query: 512 AKVH-SPPGIISGDLRNKRRRQS---AADCFTTSMV 417
A VH SP IISG L KRR++ A FT +MV
Sbjct: 142 ASVHGSPKQIISGTLLKKRRKKGQGYARRYFTLNMV 177
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.8 bits (54), Expect = 5.7
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 149 HDIDFGHMEAVNLLSSNKCSE 211
+D D+ + +NLL+SN+C E
Sbjct: 1022 NDADYAILNILNLLTSNECDE 1042
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 25.4 bits (53), Expect = 7.5
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Frame = +2
Query: 17 KEAEIKRINKELANIRSKF-KGDKTLDGYQKKKYVCKLLFIFLLGHDIDFGHMEAVNLLS 193
+ E+K I + I F KGD + YQ+ YV L + E + L+S
Sbjct: 973 RRGELKLIKDFQSQIFKVFLKGDSLEECYQEVAYVADTWLEILFTKGSNLTDDELIELIS 1032
Query: 194 SNKCSEKQI 220
N+ K +
Sbjct: 1033 ENRSMSKAL 1041
>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
6-
hydroxymethyldihydropteridinediphosphokinase/dihydroneop
terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 25.4 bits (53), Expect = 7.5
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -1
Query: 630 LQPMLHNPYTHQDSSLQEHQSKMSLQLLHPYGGHSKDELCESPLS 496
L P L +PYTHQ LQE K+ Q + Y ++ L+
Sbjct: 378 LSPDLVHPYTHQ--PLQEALDKLPSQGIRLYSSFDNKKIINGALT 420
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -3
Query: 511 RKSTLLQVLSQEICEISEGGKVQQIVSLHPWYHQRQEVW--VFQYQK 377
R ++ L +E E++EG + +I+ P + E W F +QK
Sbjct: 777 RINSAFDQLREEFMEVAEGTLLGEIIQSAPNMKEELEAWTRAFNWQK 823
>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1250
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 310 NPIHVNLALQCIANIGSKDMAEAFGTEIPKLL 405
NP+H N L + D+A F + IPK +
Sbjct: 164 NPLHENYCLNSLRKDQYVDLAIQFNSTIPKYI 195
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,722,371
Number of Sequences: 5004
Number of extensions: 57180
Number of successful extensions: 193
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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