Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00156
(672 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0084 + 676538-676669,677828-677959,678085-678210,678820-67... 109 2e-24
02_05_1134 - 34352154-34352375,34353683-34353746,34353820-343548... 50 2e-06
06_01_0475 + 3375757-3375800,3375898-3376168,3376252-3376440,337... 49 4e-06
01_06_1795 - 39925019-39926029,39926265-39926408,39927200-399272... 48 7e-06
03_06_0222 + 32466379-32466741,32466849-32466948,32467443-324675... 31 1.1
07_03_0701 + 20813500-20814267 30 1.9
01_05_0659 - 24061318-24061575,24061664-24061918,24062001-240621... 29 2.6
01_05_0658 - 24043655-24043945,24044003-24044257,24044359-240445... 28 7.8
01_01_0456 - 3385907-3386174,3386283-3386470,3386542-3387027,338... 28 7.8
>03_01_0084 +
676538-676669,677828-677959,678085-678210,678820-678882,
678964-679061,679133-679340,679859-679930,680016-680108,
680297-680398,680568-680665,681059-681140,681274-681362,
681960-682065,682145-682210,682527-682633,682907-683027,
683226-683411,683490-683789,683887-683967,684061-684225,
684297-684383,684476-684601,684750-684830,684917-684988,
685353-685364
Length = 934
Score = 109 bits (262), Expect = 2e-24
Identities = 47/83 (56%), Positives = 66/83 (79%)
Frame = +2
Query: 2 RNCKSKEAEIKRINKELANIRSKFKGDKTLDGYQKKKYVCKLLFIFLLGHDIDFGHMEAV 181
RNC +KE E R++KEL NIR++FK +K L Y+KKKYV K+L+I++LG+D+DFGHME V
Sbjct: 17 RNCHNKEQERLRVDKELGNIRTRFKNEKGLSPYEKKKYVWKMLYIYMLGYDVDFGHMETV 76
Query: 182 NLLSSNKCSEKQIGYLFISVLVN 250
+L+S+ K EKQ+GY+ S L+N
Sbjct: 77 SLISAPKYPEKQVGYIVTSCLLN 99
Score = 80.6 bits (190), Expect = 1e-15
Identities = 33/90 (36%), Positives = 59/90 (65%)
Frame = +1
Query: 238 CPSQYHSDLIKLIIQSIKNDLQSRNPIHVNLALQCIANIGSKDMAEAFGTEIPKLLVSGD 417
C ++D ++++I +++ND+ RN + LAL + NIG K+ +E+ ++ KLL+S
Sbjct: 96 CLLNENNDFLRMVINTVRNDIIGRNETYQCLALTMVGNIGGKEFSESLAPDVQKLLISSS 155
Query: 418 TMDVVKQSAALCLLRLFRKSPEIIPGGEWT 507
VV++ AALCLLRL+RK+P+++ W+
Sbjct: 156 CRPVVRKKAALCLLRLYRKNPDVVNIDGWS 185
>02_05_1134 -
34352154-34352375,34353683-34353746,34353820-34354859,
34355193-34355261,34355502-34355606,34355992-34356161,
34356244-34356351,34356397-34356525,34356577-34356681,
34357186-34357475,34357575-34357679,34358195-34358289,
34358474-34358569,34358660-34358782,34359120-34359174,
34359254-34359417,34359881-34359971,34360180-34360334,
34360823-34361002,34361314-34361487,34361776-34361917,
34362023-34362325,34362443-34362522
Length = 1354
Score = 49.6 bits (113), Expect = 2e-06
Identities = 31/97 (31%), Positives = 52/97 (53%)
Frame = +2
Query: 2 RNCKSKEAEIKRINKELANIRSKFKGDKTLDGYQKKKYVCKLLFIFLLGHDIDFGHMEAV 181
R CK+ E + +E A IR G+ + + + + KL+FI +LG+ FG ME +
Sbjct: 34 RACKTAAEERAVVRRECAEIREAI-GENQQE--IRHRNMAKLMFIHMLGYPTHFGQMECL 90
Query: 182 NLLSSNKCSEKQIGYLFISVLVNTTVTSLNLSFRALK 292
L+++ EK+IGYL + +L++ L L +LK
Sbjct: 91 KLIAAAGYPEKRIGYLGLMLLLDERQEVLMLVTNSLK 127
>06_01_0475 +
3375757-3375800,3375898-3376168,3376252-3376440,
3376816-3376989,3378039-3378218,3378565-3378719,
3379509-3379599,3380023-3380186,3380791-3380845,
3380944-3381066,3381160-3381255,3381706-3381833,
3382407-3382466,3382607-3382896,3383127-3383237,
3383318-3383395,3383487-3383659,3384192-3384296,
3385017-3385112
Length = 860
Score = 48.8 bits (111), Expect = 4e-06
Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Frame = +2
Query: 2 RNCKSKEAEIKRINKELANIRSKF-KGDKTLDGYQKKKYVCKLLFIFLLGHDIDFGHMEA 178
R CK+ E + +E A IR+ +GD+ + + + KL+FI +LG+ FG ME
Sbjct: 22 RACKTAAEERAVVRRECAAIRAAISEGDQDY----RHRNMAKLMFIHMLGYPTHFGQMEC 77
Query: 179 VNLLSSNKCSEKQIGYLFISVLVN 250
+ L+++ EK+IGYL + +L++
Sbjct: 78 LKLIAAAGFPEKRIGYLGLMLLLD 101
>01_06_1795 -
39925019-39926029,39926265-39926408,39927200-39927277,
39927722-39927838,39927925-39927981,39928492-39928623,
39928725-39928922,39929364-39929474,39929570-39929785,
39929879-39930064,39930590-39931192
Length = 950
Score = 48.0 bits (109), Expect = 7e-06
Identities = 23/80 (28%), Positives = 46/80 (57%)
Frame = +2
Query: 11 KSKEAEIKRINKELANIRSKFKGDKTLDGYQKKKYVCKLLFIFLLGHDIDFGHMEAVNLL 190
+SK E + I++EL +++ + D + + K+ + +L++ +LGHD FGH+ AV +
Sbjct: 36 RSKAEEDRIISRELDHLKRRL-ADPDVPRRKMKELLLRLVYAEMLGHDASFGHIHAVKMT 94
Query: 191 SSNKCSEKQIGYLFISVLVN 250
K+ GYL +S+ ++
Sbjct: 95 HDESLPLKRTGYLAVSLFLD 114
>03_06_0222 +
32466379-32466741,32466849-32466948,32467443-32467547,
32467627-32467789,32467995-32468115,32468625-32468705,
32468813-32468911,32468955-32468986,32468987-32469137,
32469477-32469563,32470290-32470409,32470514-32470645,
32470743-32470840,32470919-32471042,32471126-32471233,
32471822-32471957,32472751-32472861,32472963-32473026,
32473133-32473205,32473762-32473938,32474012-32474122,
32474189-32474449,32474811-32474981,32475073-32475228,
32475590-32475823,32475936-32476103,32476316-32476425,
32476513-32477041
Length = 1394
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/80 (17%), Positives = 38/80 (47%)
Frame = +1
Query: 211 KTDWIPFHICPSQYHSDLIKLIIQSIKNDLQSRNPIHVNLALQCIANIGSKDMAEAFGTE 390
+T+W+ +Y + ++ +++K ++ RNP+ + + + CI+ I + +
Sbjct: 651 RTNWLEKSPDLRKYKDSCVCVVGEAVKVRIELRNPLQIPVVVSCISLICQLSTSLDASSA 710
Query: 391 IPKLLVSGDTMDVVKQSAAL 450
+ +L +G D+ A+
Sbjct: 711 VNSVLTTGAGEDIANTKPAI 730
>07_03_0701 + 20813500-20814267
Length = 255
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = +1
Query: 232 HICPSQYHSDLIKLIIQSIKNDLQSRNPIHVNLALQCIANIGSKDMAE 375
H+ S+ H +L KLI ++ + + +RN ++ L C A G +D+A+
Sbjct: 93 HLVASRGHVELAKLISETAPSLVATRNKC-LDTPLHCAAKAGHRDVAD 139
>01_05_0659 -
24061318-24061575,24061664-24061918,24062001-24062172,
24062258-24062381,24062442-24062485,24063601-24063734,
24063822-24063905,24064100-24064390,24064713-24065045,
24065145-24065389,24065644-24065910,24065997-24066157,
24066253-24066569,24066665-24066946,24067024-24067325,
24067398-24067488,24067796-24067849,24067963-24068039,
24068159-24068318,24068653-24068737,24069029-24069238,
24069344-24069732
Length = 1444
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 68 KFKGDKTLDGYQKKKYVCKLLFIFLLGHDIDFGHMEAVNLLS-SNKC 205
KF G T +G+Q + +V + ++ HD+ G M LS S +C
Sbjct: 228 KFSGQVTYNGHQMEDFVPQRTAAYISQHDLHIGEMTVRETLSFSARC 274
>01_05_0658 -
24043655-24043945,24044003-24044257,24044359-24044530,
24044617-24044844,24045688-24045821,24045908-24045991,
24046202-24046492,24046571-24046903,24047002-24047246,
24047476-24047742,24048305-24048465,24048556-24048872,
24048966-24049247,24049325-24049626,24049699-24049789,
24049881-24049934,24050028-24050104,24050192-24050367,
24051331-24051540,24051626-24052029
Length = 1457
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 68 KFKGDKTLDGYQKKKYVCKLLFIFLLGHDIDFGHMEAVNLLS-SNKC 205
+F G T +G+Q + +V + ++ HD+ G M LS S +C
Sbjct: 210 QFSGQVTYNGHQMEDFVPQRTAAYISQHDLHIGEMTVRETLSFSARC 256
>01_01_0456 -
3385907-3386174,3386283-3386470,3386542-3387027,
3387123-3387184,3387269-3387429,3388215-3388290,
3388382-3388471,3388591-3388659,3389498-3389756
Length = 552
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +1
Query: 205 LRKTDWIPFHICPSQYHSDLIKLIIQSIKNDLQSRNPIHVN 327
+RK +P H S Y DLI L +K+ L S NP H N
Sbjct: 201 MRKRCPLPLHTTLSDYSQDLISL--HDVKSVL-SNNPFHSN 238
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,773,677
Number of Sequences: 37544
Number of extensions: 335157
Number of successful extensions: 879
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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