Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00156
         (672 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47281| Best HMM Match : Adaptin_N (HMM E-Value=0)                  120   1e-27
SB_47113| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.010
SB_57077| Best HMM Match : RhoGEF (HMM E-Value=2.1e-07)                29   2.6  
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)              29   3.4  
SB_54020| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)                   28   6.0  
SB_2973| Best HMM Match : efhand (HMM E-Value=2e-09)                   28   7.9  
SB_693| Best HMM Match : efhand (HMM E-Value=2e-09)                    28   7.9  

>SB_47281| Best HMM Match : Adaptin_N (HMM E-Value=0)
          Length = 949

 Score =  120 bits (288), Expect = 1e-27
 Identities = 56/85 (65%), Positives = 70/85 (82%)
 Frame = +1

Query: 253 HSDLIKLIIQSIKNDLQSRNPIHVNLALQCIANIGSKDMAEAFGTEIPKLLVSGDTMDVV 432
           +S+LIKLI+QSIKNDL SRN I V LALQCIANIG+++M +  G+E+PKLLVS DT D V
Sbjct: 118 NSELIKLIVQSIKNDLSSRNAIFVCLALQCIANIGNQEMVDQLGSEVPKLLVSPDTSDSV 177

Query: 433 KQSAALCLLRLFRKSPEIIPGGEWT 507
           KQ AALC+L+LFR +  ++P GEWT
Sbjct: 178 KQCAALCVLKLFRLNENLLPPGEWT 202



 Score = 90.6 bits (215), Expect = 1e-18
 Identities = 41/54 (75%), Positives = 49/54 (90%)
 Frame = +3

Query: 510 RIIHLLNDPHMGVVTAATSLIDALVKKNPDEYKGCVTLAVARLSRIVTASYTDL 671
           RI+ LLND H+GVVT+ATSLI  LV+K+PDEYKGC+ LAV+RLSRIVT+SYTDL
Sbjct: 204 RIVQLLNDKHLGVVTSATSLIQGLVQKSPDEYKGCIQLAVSRLSRIVTSSYTDL 257



 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 24/25 (96%), Positives = 25/25 (100%)
 Frame = +2

Query: 2  RNCKSKEAEIKRINKELANIRSKFK 76
          RNCKSKEAEIKRINKELANIR+KFK
Sbjct: 20 RNCKSKEAEIKRINKELANIRNKFK 44


>SB_47113| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1286

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 17/45 (37%), Positives = 28/45 (62%)
 Frame = +2

Query: 104 KKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNKCSEKQIGYLFIS 238
           K   V KL ++ +LG+DI +     + ++SS+K + K+IGYL  S
Sbjct: 39  KANAVAKLAYLEMLGYDISWAAFNIIEVMSSSKFTYKRIGYLAAS 83



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 510 RIIHLLNDPHMGVVTAATSLIDALVKKNPDEY 605
           R+   L DP  GV +AA ++I  L +KNP  Y
Sbjct: 113 RLREKLEDPEPGVQSAAVNVICELARKNPKNY 144


>SB_57077| Best HMM Match : RhoGEF (HMM E-Value=2.1e-07)
          Length = 658

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -1

Query: 615 HNPYTHQD--SSLQEHQSKMSLQLLHPYGGHSKDELCES 505
           HNP   +   +SL EH+ K  L LL   G HS++ + ES
Sbjct: 598 HNPEEAKTRRTSLVEHEHKQYLSLLGVVGSHSQENIPES 636


>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
          Length = 2858

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/29 (37%), Positives = 22/29 (75%)
 Frame = +2

Query: 26  EIKRINKELANIRSKFKGDKTLDGYQKKK 112
           ++ ++ KELAN+R+K+K  +  DG ++K+
Sbjct: 821 KVAQLEKELANLRTKYKVIEDRDGMKQKE 849


>SB_54020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2431

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 493 QVLSQEICEISEGGKVQQIVSLHPWYH 413
           Q L Q + E SEG  V  + S+H WY+
Sbjct: 20  QHLIQRLTEASEGEMVHVLKSVHTWYY 46


>SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)
          Length = 2200

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = +3

Query: 510 RIIHLLNDPHMGVVTAATSLIDALVKKNPDEYKGCVTLAVARLSRIVTAS 659
           +I H++N      VTA  + I+ L KK P++    V L + +++ +V A+
Sbjct: 210 KIFHVMNHTLSTNVTAVIAFINELSKKTPEQ---IVDLTIMKITEMVNAT 256


>SB_2973| Best HMM Match : efhand (HMM E-Value=2e-09)
          Length = 508

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +2

Query: 188 LSSNKCSEKQIGYLFISVLVNTTVTSLNLS 277
           ++ N  S+K+   L  ++LVN+TVT ++LS
Sbjct: 201 MAGNDLSDKEAALLCSALLVNSTVTRIDLS 230


>SB_693| Best HMM Match : efhand (HMM E-Value=2e-09)
          Length = 500

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +2

Query: 188 LSSNKCSEKQIGYLFISVLVNTTVTSLNLS 277
           ++ N  S+K+   L  ++LVN+TVT ++LS
Sbjct: 193 MAGNDLSDKEAALLCSALLVNSTVTRIDLS 222


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,097,352
Number of Sequences: 59808
Number of extensions: 424639
Number of successful extensions: 1254
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)