Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00156
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28742-2|AAA68332.2|  925|Caenorhabditis elegans Adaptin, alpha ...   165   3e-41
AL132876-8|CAD21660.1|  829|Caenorhabditis elegans Hypothetical ...    54   9e-08
AF016671-5|AAB66112.2| 1251|Caenorhabditis elegans Adaptin or ad...    42   3e-04
AL032631-1|CAB63336.1|  453|Caenorhabditis elegans Hypothetical ...    29   3.0  
Z81085-2|CAB03114.2|  618|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z49968-3|CAA90260.1|  189|Caenorhabditis elegans Hypothetical pr...    28   6.9  
U50135-4|AAA93455.3| 1487|Caenorhabditis elegans Hypothetical pr...    28   6.9  
U41540-7|AAM54182.1|  930|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U41540-6|AAM54183.1|  934|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>U28742-2|AAA68332.2|  925|Caenorhabditis elegans Adaptin, alpha
           chain (clathrinassociated complex) protein 2 protein.
          Length = 925

 Score =  165 bits (400), Expect = 3e-41
 Identities = 78/97 (80%), Positives = 86/97 (88%)
 Frame = +2

Query: 2   RNCKSKEAEIKRINKELANIRSKFKGDKTLDGYQKKKYVCKLLFIFLLGHDIDFGHMEAV 181
           RNCKSKEAE+KRINKELANIRSKFKGDKTLDGYQKKKYVCKLLFIFLLG+DIDFGHMEAV
Sbjct: 20  RNCKSKEAELKRINKELANIRSKFKGDKTLDGYQKKKYVCKLLFIFLLGNDIDFGHMEAV 79

Query: 182 NLLSSNKCSEKQIGYLFISVLVNTTVTSLNLSFRALK 292
           NLLSSNK +EKQIGYLFISVL+      + L  + ++
Sbjct: 80  NLLSSNKYTEKQIGYLFISVLIEQQSDLMKLIVQGIR 116



 Score =  127 bits (306), Expect = 8e-30
 Identities = 56/86 (65%), Positives = 74/86 (86%)
 Frame = +1

Query: 247 QYHSDLIKLIIQSIKNDLQSRNPIHVNLALQCIANIGSKDMAEAFGTEIPKLLVSGDTMD 426
           +  SDL+KLI+Q I+NDL SRNP+HVNLALQCI+N+GS++M EAF T++PKLLVSG+T+D
Sbjct: 102 EQQSDLMKLIVQGIRNDLTSRNPVHVNLALQCISNMGSREMVEAFCTDLPKLLVSGETID 161

Query: 427 VVKQSAALCLLRLFRKSPEIIPGGEW 504
            VKQSAALC+L+LFR SP+    G++
Sbjct: 162 FVKQSAALCILKLFRNSPDSFQPGDY 187



 Score = 87.4 bits (207), Expect = 8e-18
 Identities = 41/54 (75%), Positives = 48/54 (88%)
 Frame = +3

Query: 510 RIIHLLNDPHMGVVTAATSLIDALVKKNPDEYKGCVTLAVARLSRIVTASYTDL 671
           RI+HLLND HMGVVT+A SLI+AL KK P+EYKG V LA++RLSRIVTA+YTDL
Sbjct: 190 RIVHLLNDSHMGVVTSAASLIEALSKKWPEEYKGAVPLAISRLSRIVTATYTDL 243


>AL132876-8|CAD21660.1|  829|Caenorhabditis elegans Hypothetical
           protein Y105E8A.9 protein.
          Length = 829

 Score = 54.0 bits (124), Expect = 9e-08
 Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 2/103 (1%)
 Frame = +2

Query: 2   RNCKSKEAEIKRINKELANIRSKFKGDKTLDGYQKKKYVCKLLFIFLLGHDIDFGHMEAV 181
           R  ++   E   +++E ANIR  F+ D   D   K + + KLL+I +LG+   FG ME +
Sbjct: 37  RAARTMAEERAVVDRESANIRESFRDD---DSPWKCRNIAKLLYIHMLGYPAHFGQMECM 93

Query: 182 NLLSSNKCSEKQIGYLFISVLVNTTVTSLNLSFRALKT--TCS 304
            L++  + ++K+IGYL   +L++       L   +LK   TCS
Sbjct: 94  KLVAHPRFTDKRIGYLGAMLLLDERSEVHMLVTNSLKNDLTCS 136



 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 25/78 (32%), Positives = 41/78 (52%)
 Frame = +1

Query: 256 SDLIKLIIQSIKNDLQSRNPIHVNLALQCIANIGSKDMAEAFGTEIPKLLVSGDTMDVVK 435
           S++  L+  S+KNDL         LAL  + +I S +M      E+ K++   +    +K
Sbjct: 119 SEVHMLVTNSLKNDLTCSTQFVSGLALCTLGSICSAEMCRDLANEVEKIIKQNNA--YLK 176

Query: 436 QSAALCLLRLFRKSPEII 489
           + AALC  R+ RK PE++
Sbjct: 177 KKAALCAFRIVRKVPELM 194


>AF016671-5|AAB66112.2| 1251|Caenorhabditis elegans Adaptin or
           adaptin-related proteinprotein 5, isoform a protein.
          Length = 1251

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 21/72 (29%), Positives = 41/72 (56%)
 Frame = +2

Query: 14  SKEAEIKRINKELANIRSKFKGDKTLDGYQKKKYVCKLLFIFLLGHDIDFGHMEAVNLLS 193
           +K+ E + I + +  I+ + + D     Y K   + KL ++ +LG+DI +     + +++
Sbjct: 28  NKDNESRYITQCMEEIKQELRQDSI---YVKANAIEKLAYLQMLGYDISWASFNVIEVMA 84

Query: 194 SNKCSEKQIGYL 229
           S K +EK+IGYL
Sbjct: 85  STKYTEKRIGYL 96



 Score = 30.3 bits (65), Expect = 1.3
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +3

Query: 510 RIIHLLNDPHMGVVTAATSLIDALVKKNPDEYKGCVTLAVARLSRIVTAS 659
           R+   L DP  GV ++A ++I  L +KNP  Y   +TLA      + T+S
Sbjct: 187 RLKEKLEDPDPGVQSSAVNVICELARKNPKNY---LTLAPVFFKLMTTSS 233


>AL032631-1|CAB63336.1|  453|Caenorhabditis elegans Hypothetical
           protein Y106G6H.1 protein.
          Length = 453

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -1

Query: 489 YYLRRFAK*AKEAKCSRLFHYIHGITRDKKFGYFSTKSFSH 367
           YY++R     +   C+     ++ IT D+ FGYFST + +H
Sbjct: 178 YYMKR-----ESEVCNNQITDLNSITEDQLFGYFSTLATAH 213


>Z81085-2|CAB03114.2|  618|Caenorhabditis elegans Hypothetical
           protein F46F3.2 protein.
          Length = 618

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -1

Query: 588 SLQEHQSKMSLQLLHPYGGHSKDELCESPLSSRYYLR 478
           SL+ +  ++ L+  +   G+SK ++ +S L SRYY R
Sbjct: 543 SLEHNSKRLRLKFENNLDGYSKYQMTKSMLLSRYYHR 579


>Z49968-3|CAA90260.1|  189|Caenorhabditis elegans Hypothetical
           protein M110.3 protein.
          Length = 189

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -3

Query: 433 SLHPWYHQRQEVWVFQYQKLQPYLCYQC-WQYIEELSLHE*DCETASRF 290
           S+H  +HQ   +W  +   +Q  +C QC  +Y ++L+L      T  RF
Sbjct: 39  SIHWVHHQCLAMWFSKANAVQQVMCIQCQTRYQKQLTLKSWKSWTIPRF 87


>U50135-4|AAA93455.3| 1487|Caenorhabditis elegans Hypothetical
           protein C52E12.4 protein.
          Length = 1487

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
 Frame = -2

Query: 542 HMGVIQKMNYAKVHSPPGIISGDL----RNKRRR 453
           H G+I+K    ++H PPG +SG      RN+R R
Sbjct: 150 HNGIIEKQQ--RIHHPPGTVSGGTHTLPRNRRDR 181


>U41540-7|AAM54182.1|  930|Caenorhabditis elegans Hypothetical
           protein F35H12.2a protein.
          Length = 930

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 588 SLQEHQSKMSLQLLHPYGGHSKDELCESPLSS 493
           +L +  S+M  QLLHP G    D  C+ PL S
Sbjct: 352 NLGKSPSRMPTQLLHPTGDDESD--CDEPLLS 381


>U41540-6|AAM54183.1|  934|Caenorhabditis elegans Hypothetical
           protein F35H12.2b protein.
          Length = 934

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 588 SLQEHQSKMSLQLLHPYGGHSKDELCESPLSS 493
           +L +  S+M  QLLHP G    D  C+ PL S
Sbjct: 352 NLGKSPSRMPTQLLHPTGDDESD--CDEPLLS 381


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,015,331
Number of Sequences: 27780
Number of extensions: 318835
Number of successful extensions: 986
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)