Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00156
(672 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g22780.1 68418.m02663 adaptin family protein similar to SP|P1... 112 2e-25
At5g22770.3 68418.m02661 adaptin family protein similar to SP|P1... 112 2e-25
At5g22770.2 68418.m02660 adaptin family protein similar to SP|P1... 112 2e-25
At5g22770.1 68418.m02659 adaptin family protein similar to SP|P1... 112 2e-25
At1g23900.2 68414.m03016 gamma-adaptin, putative similar to SP|O... 58 4e-09
At1g23900.1 68414.m03015 gamma-adaptin, putative similar to SP|O... 58 4e-09
At1g23940.1 68414.m03021 adaptin family protein low similarity t... 50 1e-06
At1g60070.1 68414.m06767 gamma-adaptin, putative similar to gamm... 49 2e-06
At1g48760.2 68414.m05457 delta-adaptin, putative similar to SP|O... 49 3e-06
At1g48760.1 68414.m05456 delta-adaptin, putative similar to SP|O... 49 3e-06
At1g31730.1 68414.m03893 epsilon-adaptin, putative similar to SP... 44 9e-05
At4g23460.1 68417.m03381 beta-adaptin, putative strong similarit... 32 0.30
At4g11380.1 68417.m01835 beta-adaptin, putative strong similarit... 32 0.30
At3g63290.2 68416.m07114 expressed protein 30 1.6
At3g63290.1 68416.m07113 expressed protein 30 1.6
At3g07300.1 68416.m00869 eukaryotic translation initiation facto... 29 2.1
At5g16280.1 68418.m01901 expressed protein 29 3.7
At2g21840.1 68415.m02595 CHP-rich zinc finger protein, putative 29 3.7
At5g06930.1 68418.m00783 expressed protein 28 6.5
At5g59220.1 68418.m07422 protein phosphatase 2C, putative / PP2C... 27 8.6
At3g18100.2 68416.m02302 myb family transcription factor (MYB4R1... 27 8.6
At3g18100.1 68416.m02301 myb family transcription factor (MYB4R1... 27 8.6
>At5g22780.1 68418.m02663 adaptin family protein similar to
SP|P18484 adaptor-related protein complex 2 alpha 2
subunit (Alpha-adaptin C) (Clathrin assembly protein
complex 2 alpha-C large chain) {Rattus norvegicus};
contains Pfam profiles PF01602 Adaptin N terminal
region, PF02883 Adaptin C-terminal domain
Length = 1013
Score = 112 bits (269), Expect = 2e-25
Identities = 51/97 (52%), Positives = 72/97 (74%)
Frame = +2
Query: 2 RNCKSKEAEIKRINKELANIRSKFKGDKTLDGYQKKKYVCKLLFIFLLGHDIDFGHMEAV 181
RNC++KEAE R++KEL NIR+ FK +K L Y+KKKYV K+L+I +LG+D+DFGHMEAV
Sbjct: 15 RNCQNKEAERLRVDKELGNIRTCFKNEKVLTPYKKKKYVWKMLYIHMLGYDVDFGHMEAV 74
Query: 182 NLLSSNKCSEKQIGYLFISVLVNTTVTSLNLSFRALK 292
+L+S+ K EKQ+GY+ S L+N L L+ ++
Sbjct: 75 SLISAPKYPEKQVGYIVTSCLLNENHDFLKLAINTVR 111
Score = 79.0 bits (186), Expect = 3e-15
Identities = 36/89 (40%), Positives = 54/89 (60%)
Frame = +1
Query: 238 CPSQYHSDLIKLIIQSIKNDLQSRNPIHVNLALQCIANIGSKDMAEAFGTEIPKLLVSGD 417
C + D +KL I +++ND+ RN LAL + NIG +D AE+ ++ KLL+S
Sbjct: 94 CLLNENHDFLKLAINTVRNDIIGRNETFQCLALTLVGNIGGRDFAESLAPDVQKLLISSS 153
Query: 418 TMDVVKQSAALCLLRLFRKSPEIIPGGEW 504
+V++ AALCLLRLFRK+P+ + W
Sbjct: 154 CRPLVRKKAALCLLRLFRKNPDAVNVDGW 182
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = +3
Query: 510 RIIHLLNDPHMGVVTAATSLIDALVKKNPDEYKGCVTLAVARLSRI 647
R+ LL++ +GV+T++TSL+ ALV N + Y C+ V L R+
Sbjct: 185 RMAQLLDERDLGVLTSSTSLLVALVSNNHEAYSSCLPKCVKILERL 230
>At5g22770.3 68418.m02661 adaptin family protein similar to
SP|P18484 adaptor-related protein complex 2 alpha 2
subunit (Alpha-adaptin C) (Clathrin assembly protein
complex 2 alpha-C large chain) {Rattus norvegicus};
contains Pfam profiles PF01602 Adaptin N terminal
region, PF02883 Adaptin C-terminal domain
Length = 1012
Score = 112 bits (269), Expect = 2e-25
Identities = 51/97 (52%), Positives = 72/97 (74%)
Frame = +2
Query: 2 RNCKSKEAEIKRINKELANIRSKFKGDKTLDGYQKKKYVCKLLFIFLLGHDIDFGHMEAV 181
RNC++KEAE R++KEL NIR+ FK +K L Y+KKKYV K+L+I +LG+D+DFGHMEAV
Sbjct: 15 RNCQNKEAERLRVDKELGNIRTCFKNEKVLTPYKKKKYVWKMLYIHMLGYDVDFGHMEAV 74
Query: 182 NLLSSNKCSEKQIGYLFISVLVNTTVTSLNLSFRALK 292
+L+S+ K EKQ+GY+ S L+N L L+ ++
Sbjct: 75 SLISAPKYPEKQVGYIVTSCLLNENHDFLKLAINTVR 111
Score = 79.0 bits (186), Expect = 3e-15
Identities = 36/89 (40%), Positives = 54/89 (60%)
Frame = +1
Query: 238 CPSQYHSDLIKLIIQSIKNDLQSRNPIHVNLALQCIANIGSKDMAEAFGTEIPKLLVSGD 417
C + D +KL I +++ND+ RN LAL + NIG +D AE+ ++ KLL+S
Sbjct: 94 CLLNENHDFLKLAINTVRNDIIGRNETFQCLALTLVGNIGGRDFAESLAPDVQKLLISSS 153
Query: 418 TMDVVKQSAALCLLRLFRKSPEIIPGGEW 504
+V++ AALCLLRLFRK+P+ + W
Sbjct: 154 CRPLVRKKAALCLLRLFRKNPDAVNVDGW 182
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = +3
Query: 510 RIIHLLNDPHMGVVTAATSLIDALVKKNPDEYKGCVTLAVARLSRI 647
R+ LL++ +GV+T++TSL+ ALV N + Y C+ V L R+
Sbjct: 185 RMAQLLDERDLGVLTSSTSLLVALVSNNHEAYSSCLPKCVKILERL 230
>At5g22770.2 68418.m02660 adaptin family protein similar to
SP|P18484 adaptor-related protein complex 2 alpha 2
subunit (Alpha-adaptin C) (Clathrin assembly protein
complex 2 alpha-C large chain) {Rattus norvegicus};
contains Pfam profiles PF01602 Adaptin N terminal
region, PF02883 Adaptin C-terminal domain
Length = 1012
Score = 112 bits (269), Expect = 2e-25
Identities = 51/97 (52%), Positives = 72/97 (74%)
Frame = +2
Query: 2 RNCKSKEAEIKRINKELANIRSKFKGDKTLDGYQKKKYVCKLLFIFLLGHDIDFGHMEAV 181
RNC++KEAE R++KEL NIR+ FK +K L Y+KKKYV K+L+I +LG+D+DFGHMEAV
Sbjct: 15 RNCQNKEAERLRVDKELGNIRTCFKNEKVLTPYKKKKYVWKMLYIHMLGYDVDFGHMEAV 74
Query: 182 NLLSSNKCSEKQIGYLFISVLVNTTVTSLNLSFRALK 292
+L+S+ K EKQ+GY+ S L+N L L+ ++
Sbjct: 75 SLISAPKYPEKQVGYIVTSCLLNENHDFLKLAINTVR 111
Score = 79.0 bits (186), Expect = 3e-15
Identities = 36/89 (40%), Positives = 54/89 (60%)
Frame = +1
Query: 238 CPSQYHSDLIKLIIQSIKNDLQSRNPIHVNLALQCIANIGSKDMAEAFGTEIPKLLVSGD 417
C + D +KL I +++ND+ RN LAL + NIG +D AE+ ++ KLL+S
Sbjct: 94 CLLNENHDFLKLAINTVRNDIIGRNETFQCLALTLVGNIGGRDFAESLAPDVQKLLISSS 153
Query: 418 TMDVVKQSAALCLLRLFRKSPEIIPGGEW 504
+V++ AALCLLRLFRK+P+ + W
Sbjct: 154 CRPLVRKKAALCLLRLFRKNPDAVNVDGW 182
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = +3
Query: 510 RIIHLLNDPHMGVVTAATSLIDALVKKNPDEYKGCVTLAVARLSRI 647
R+ LL++ +GV+T++TSL+ ALV N + Y C+ V L R+
Sbjct: 185 RMAQLLDERDLGVLTSSTSLLVALVSNNHEAYSSCLPKCVKILERL 230
>At5g22770.1 68418.m02659 adaptin family protein similar to
SP|P18484 adaptor-related protein complex 2 alpha 2
subunit (Alpha-adaptin C) (Clathrin assembly protein
complex 2 alpha-C large chain) {Rattus norvegicus};
contains Pfam profiles PF01602 Adaptin N terminal
region, PF02883 Adaptin C-terminal domain
Length = 1012
Score = 112 bits (269), Expect = 2e-25
Identities = 51/97 (52%), Positives = 72/97 (74%)
Frame = +2
Query: 2 RNCKSKEAEIKRINKELANIRSKFKGDKTLDGYQKKKYVCKLLFIFLLGHDIDFGHMEAV 181
RNC++KEAE R++KEL NIR+ FK +K L Y+KKKYV K+L+I +LG+D+DFGHMEAV
Sbjct: 15 RNCQNKEAERLRVDKELGNIRTCFKNEKVLTPYKKKKYVWKMLYIHMLGYDVDFGHMEAV 74
Query: 182 NLLSSNKCSEKQIGYLFISVLVNTTVTSLNLSFRALK 292
+L+S+ K EKQ+GY+ S L+N L L+ ++
Sbjct: 75 SLISAPKYPEKQVGYIVTSCLLNENHDFLKLAINTVR 111
Score = 79.0 bits (186), Expect = 3e-15
Identities = 36/89 (40%), Positives = 54/89 (60%)
Frame = +1
Query: 238 CPSQYHSDLIKLIIQSIKNDLQSRNPIHVNLALQCIANIGSKDMAEAFGTEIPKLLVSGD 417
C + D +KL I +++ND+ RN LAL + NIG +D AE+ ++ KLL+S
Sbjct: 94 CLLNENHDFLKLAINTVRNDIIGRNETFQCLALTLVGNIGGRDFAESLAPDVQKLLISSS 153
Query: 418 TMDVVKQSAALCLLRLFRKSPEIIPGGEW 504
+V++ AALCLLRLFRK+P+ + W
Sbjct: 154 CRPLVRKKAALCLLRLFRKNPDAVNVDGW 182
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = +3
Query: 510 RIIHLLNDPHMGVVTAATSLIDALVKKNPDEYKGCVTLAVARLSRI 647
R+ LL++ +GV+T++TSL+ ALV N + Y C+ V L R+
Sbjct: 185 RMAQLLDERDLGVLTSSTSLLVALVSNNHEAYSSCLPKCVKILERL 230
>At1g23900.2 68414.m03016 gamma-adaptin, putative similar to
SP|O43747 Adapter-related protein complex 1 gamma 1
subunit (Gamma-adaptin) (Clathrin assembly protein
complex 1 gamma-1 large chain) {Homo sapiens}; contains
Pfam profiles PF01602: Adaptin N terminal region,
PF02883: Adaptin C-terminal domain
Length = 876
Score = 58.4 bits (135), Expect = 4e-09
Identities = 34/97 (35%), Positives = 54/97 (55%)
Frame = +2
Query: 2 RNCKSKEAEIKRINKELANIRSKFKGDKTLDGYQKKKYVCKLLFIFLLGHDIDFGHMEAV 181
R CK+ E + KE A+IR+ D D + + + + KL+FI +LG+ FG ME +
Sbjct: 18 RACKTAAEERAVVRKECADIRALINED---DPHDRHRNLAKLMFIHMLGYPTHFGQMECL 74
Query: 182 NLLSSNKCSEKQIGYLFISVLVNTTVTSLNLSFRALK 292
L++S EK+IGYL + +L++ L L +LK
Sbjct: 75 KLIASPGFPEKRIGYLGLMLLLDERQEVLMLVTNSLK 111
>At1g23900.1 68414.m03015 gamma-adaptin, putative similar to
SP|O43747 Adapter-related protein complex 1 gamma 1
subunit (Gamma-adaptin) (Clathrin assembly protein
complex 1 gamma-1 large chain) {Homo sapiens}; contains
Pfam profiles PF01602: Adaptin N terminal region,
PF02883: Adaptin C-terminal domain
Length = 876
Score = 58.4 bits (135), Expect = 4e-09
Identities = 34/97 (35%), Positives = 54/97 (55%)
Frame = +2
Query: 2 RNCKSKEAEIKRINKELANIRSKFKGDKTLDGYQKKKYVCKLLFIFLLGHDIDFGHMEAV 181
R CK+ E + KE A+IR+ D D + + + + KL+FI +LG+ FG ME +
Sbjct: 18 RACKTAAEERAVVRKECADIRALINED---DPHDRHRNLAKLMFIHMLGYPTHFGQMECL 74
Query: 182 NLLSSNKCSEKQIGYLFISVLVNTTVTSLNLSFRALK 292
L++S EK+IGYL + +L++ L L +LK
Sbjct: 75 KLIASPGFPEKRIGYLGLMLLLDERQEVLMLVTNSLK 111
>At1g23940.1 68414.m03021 adaptin family protein low similarity to
SP|Q99128 Gamma-adaptin (Golgi adaptor HA1/AP1 adaptin
gamma subunit) (Clathrin assembly protein complex 1
gamma large chain) {Ustilago maydis}; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 495
Score = 50.4 bits (115), Expect = 1e-06
Identities = 28/84 (33%), Positives = 47/84 (55%)
Frame = +2
Query: 2 RNCKSKEAEIKRINKELANIRSKFKGDKTLDGYQKKKYVCKLLFIFLLGHDIDFGHMEAV 181
R C++ E + KE ANIR+ D D + + + + KL+ I +LG+ F ME +
Sbjct: 142 RACQTAAEERAVVRKECANIRALINED---DPHDRHRNLAKLMLIHMLGYPTHFVQMECL 198
Query: 182 NLLSSNKCSEKQIGYLFISVLVNT 253
L++S EK+IGYL + +++ T
Sbjct: 199 KLIASPGFPEKRIGYLGLMLMLVT 222
>At1g60070.1 68414.m06767 gamma-adaptin, putative similar to
gamma-adaptin GI:2765190 from [Homo sapiens]; contains
Pfam profiles PF01602: Adaptin N terminal region,
PF02883: Adaptin C-terminal domain
Length = 867
Score = 49.2 bits (112), Expect = 2e-06
Identities = 32/97 (32%), Positives = 51/97 (52%)
Frame = +2
Query: 2 RNCKSKEAEIKRINKELANIRSKFKGDKTLDGYQKKKYVCKLLFIFLLGHDIDFGHMEAV 181
R K+ E + KE A IR+ + D + + + KL+FI +LG+ FG ME +
Sbjct: 18 RASKTAAEERAVVRKECAAIRASINEN---DQDYRHRDLAKLMFIHMLGYPTHFGQMECL 74
Query: 182 NLLSSNKCSEKQIGYLFISVLVNTTVTSLNLSFRALK 292
L++S EK+IGYL + +L++ L L +LK
Sbjct: 75 KLIASPGFPEKRIGYLGLMLLLDERQEVLMLVTNSLK 111
>At1g48760.2 68414.m05457 delta-adaptin, putative similar to
SP|O14617 Adapter-related protein complex 3 delta 1
subunit (Delta-adaptin 3) {Homo sapiens}; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 869
Score = 48.8 bits (111), Expect = 3e-06
Identities = 26/73 (35%), Positives = 42/73 (57%)
Frame = +1
Query: 256 SDLIKLIIQSIKNDLQSRNPIHVNLALQCIANIGSKDMAEAFGTEIPKLLVSGDTMDVVK 435
+ ++ LI ++ DL S N V+LAL+C++ IG+ D+A E+ LL G + VK
Sbjct: 106 TSVMLLITNQVRKDLNSANEYEVSLALECLSRIGTHDLARDLTPEVFTLL--GSSKSFVK 163
Query: 436 QSAALCLLRLFRK 474
+ A +LR+F K
Sbjct: 164 KKAIGVVLRVFEK 176
>At1g48760.1 68414.m05456 delta-adaptin, putative similar to
SP|O14617 Adapter-related protein complex 3 delta 1
subunit (Delta-adaptin 3) {Homo sapiens}; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 869
Score = 48.8 bits (111), Expect = 3e-06
Identities = 26/73 (35%), Positives = 42/73 (57%)
Frame = +1
Query: 256 SDLIKLIIQSIKNDLQSRNPIHVNLALQCIANIGSKDMAEAFGTEIPKLLVSGDTMDVVK 435
+ ++ LI ++ DL S N V+LAL+C++ IG+ D+A E+ LL G + VK
Sbjct: 106 TSVMLLITNQVRKDLNSANEYEVSLALECLSRIGTHDLARDLTPEVFTLL--GSSKSFVK 163
Query: 436 QSAALCLLRLFRK 474
+ A +LR+F K
Sbjct: 164 KKAIGVVLRVFEK 176
>At1g31730.1 68414.m03893 epsilon-adaptin, putative similar to
SP|Q9UPM8 Adapter-related protein complex 4 epsilon 1
subunit (Epsilon subunit of AP-4) (AP-4 adapter complex
epsilon subunit) {Homo sapiens}; contains Pfam profile:
PF01602 Adaptin N terminal region
Length = 938
Score = 44.0 bits (99), Expect = 9e-05
Identities = 17/48 (35%), Positives = 32/48 (66%)
Frame = +2
Query: 107 KKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNKCSEKQIGYLFISVLVN 250
K+Y+ +L++I +LGHD FG++ AV + + K+ GYL +++ +N
Sbjct: 67 KEYIIRLVYIEMLGHDASFGYIYAVKMTHDDNLLLKRTGYLAVTLFLN 114
>At4g23460.1 68417.m03381 beta-adaptin, putative strong similarity
to SP|Q10567 Adapter-related protein complex 1 beta 1
subunit (Beta-adaptin 1) [Homo sapiens], beta-adaptin
[Drosophila melanogaster] GI:434902; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 893
Score = 32.3 bits (70), Expect = 0.30
Identities = 21/77 (27%), Positives = 38/77 (49%)
Frame = +1
Query: 259 DLIKLIIQSIKNDLQSRNPIHVNLALQCIANIGSKDMAEAFGTEIPKLLVSGDTMDVVKQ 438
DL L + + D Q NP+ LA++ + I + E + K L D V++
Sbjct: 84 DLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQKCLKDDDPY--VRK 141
Query: 439 SAALCLLRLFRKSPEII 489
+AA+C+ +LF + E++
Sbjct: 142 TAAICVAKLFDINAELV 158
>At4g11380.1 68417.m01835 beta-adaptin, putative strong similarity
to SP|Q10567 Adapter-related protein complex 1 beta 1
subunit (Beta-adaptin 1) [Homo sapiens], beta-adaptin
[Drosophila melanogaster] GI:434902; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 894
Score = 32.3 bits (70), Expect = 0.30
Identities = 21/77 (27%), Positives = 38/77 (49%)
Frame = +1
Query: 259 DLIKLIIQSIKNDLQSRNPIHVNLALQCIANIGSKDMAEAFGTEIPKLLVSGDTMDVVKQ 438
DL L + + D Q NP+ LA++ + I + E + K L D V++
Sbjct: 84 DLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQKCLKDDDPY--VRK 141
Query: 439 SAALCLLRLFRKSPEII 489
+AA+C+ +LF + E++
Sbjct: 142 TAAICVAKLFDINAELV 158
>At3g63290.2 68416.m07114 expressed protein
Length = 303
Score = 29.9 bits (64), Expect = 1.6
Identities = 22/84 (26%), Positives = 42/84 (50%)
Frame = -1
Query: 624 PMLHNPYTHQDSSLQEHQSKMSLQLLHPYGGHSKDELCESPLSSRYYLRRFAK*AKEAKC 445
PM +PY++Q+ SL S LQ+ HP +K + ++P S +L + + A
Sbjct: 155 PMFLSPYSYQEFSLMSSHS--YLQIYHP--SKNKFYMVKTPQDS--FLVQIGESADILSK 208
Query: 444 SRLFHYIHGITRDKKFGYFSTKSF 373
+L +H + + +K + S ++F
Sbjct: 209 GKLRSTLHCVCKPEKLDHVSRETF 232
>At3g63290.1 68416.m07113 expressed protein
Length = 403
Score = 29.9 bits (64), Expect = 1.6
Identities = 22/84 (26%), Positives = 42/84 (50%)
Frame = -1
Query: 624 PMLHNPYTHQDSSLQEHQSKMSLQLLHPYGGHSKDELCESPLSSRYYLRRFAK*AKEAKC 445
PM +PY++Q+ SL S LQ+ HP +K + ++P S +L + + A
Sbjct: 255 PMFLSPYSYQEFSLMSSHS--YLQIYHP--SKNKFYMVKTPQDS--FLVQIGESADILSK 308
Query: 444 SRLFHYIHGITRDKKFGYFSTKSF 373
+L +H + + +K + S ++F
Sbjct: 309 GKLRSTLHCVCKPEKLDHVSRETF 332
>At3g07300.1 68416.m00869 eukaryotic translation initiation factor
2B family protein / eIF-2B family protein similar to
SP|P49770 Translation initiation factor eIF-2B beta
subunit (eIF-2B GDP-GTP exchange factor) {Homo sapiens};
contains Pfam profile PF01008: Initiation factor 2
subunit family
Length = 407
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/50 (24%), Positives = 25/50 (50%)
Frame = +3
Query: 510 RIIHLLNDPHMGVVTAATSLIDALVKKNPDEYKGCVTLAVARLSRIVTAS 659
R++H++ + + + TAA +D L + D+ C + +S V A+
Sbjct: 79 RVLHIIREEDLSLTTAAMGGLDLLDASDDDDVDNCKGIGFPAMSAAVVAA 128
>At5g16280.1 68418.m01901 expressed protein
Length = 1265
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/50 (24%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +1
Query: 211 KTDWIPFH--ICPSQYHSDLIKLIIQSIKNDLQSRNPIHVNLALQCIANI 354
K++W+ + P +Y + + +S+K DL+ RNP+ ++ ++ ++ I
Sbjct: 612 KSNWLELQSKLLPKKYKESNVCVAGESVKLDLEFRNPLLISTSITSVSLI 661
>At2g21840.1 68415.m02595 CHP-rich zinc finger protein, putative
Length = 746
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +2
Query: 140 LLGHDIDFGHMEAVNLLSSNKCSEKQIGYLFISVLVNTTVTSLNLSFRALK 292
L+GH + HM A++L S +KC+ Q+ + T+ +N +K
Sbjct: 571 LVGHPLHVDHMLAISLKSGSKCTACQLN--ITKYGYHCTICEINFHIECIK 619
>At5g06930.1 68418.m00783 expressed protein
Length = 657
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -1
Query: 633 ELQPMLHNP--YTHQDSSLQEHQSKMSLQLLHPYGGHSKDELCESPLSSRYY 484
++ P+ ++P +H + E K+ L + H G+S +E E+P S YY
Sbjct: 580 QVNPVSYSPPSCSHLTDIVAEFSVKLKLSMTHK-NGYSSNEKVETPRSPPYY 630
>At5g59220.1 68418.m07422 protein phosphatase 2C, putative / PP2C,
putative ABA induced protein phosphatase 2C, Fagus
sylvatica, EMBL:FSY277743
Length = 413
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -2
Query: 530 IQKMNYAKVHSPPGIISGDLRNKRRRQSAADCFTTSMVSPET 405
I++ + P + GDL+ +RRR+S +TS V ET
Sbjct: 45 IRRFKFVSGEQEPVFVDGDLQRRRRRESTV-AASTSTVFYET 85
>At3g18100.2 68416.m02302 myb family transcription factor (MYB4R1)
contains Pfam profile: PF00249 Myb-like DNA-binding
domain
Length = 634
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 391 IPKLLVSGDTMDVVKQSAALCLLRLFRKSPEIIPGGEWTFA 513
+PK ++ D++D+ +SAA C R +I G WT A
Sbjct: 197 LPK--INWDSLDIKDRSAAECEARWMSSEDPLINHGPWTAA 235
>At3g18100.1 68416.m02301 myb family transcription factor (MYB4R1)
contains Pfam profile: PF00249 Myb-like DNA-binding
domain
Length = 847
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 391 IPKLLVSGDTMDVVKQSAALCLLRLFRKSPEIIPGGEWTFA 513
+PK ++ D++D+ +SAA C R +I G WT A
Sbjct: 410 LPK--INWDSLDIKDRSAAECEARWMSSEDPLINHGPWTAA 448
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,011,080
Number of Sequences: 28952
Number of extensions: 289875
Number of successful extensions: 924
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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