Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00155
         (706 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    74   1e-15
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    24   1.0  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   3.2  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 73.7 bits (173), Expect = 1e-15
 Identities = 35/84 (41%), Positives = 49/84 (58%)
 Frame = +1

Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 435
           ++++PTRELA QI      F + S V+   ++GG     Q   +  G  I++ATPGRL D
Sbjct: 239 VIMSPTRELAIQIADQGKKFAYNSTVKVAVIYGGTSTNHQRGRILGGCHILVATPGRLKD 298

Query: 436 FLEKGTTNLQRCTYLVLDEADRML 507
           F+ +G  +     Y VLDEADRML
Sbjct: 299 FVNRGNVSFNSLKYFVLDEADRML 322



 Score = 40.7 bits (91), Expect = 1e-05
 Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
 Frame = +3

Query: 435 FLGKGHNQLTAVHIFSS**G*SYVGMGFEPQIRKIIE-QIRP---DRQTLMWSATWPKEV 602
           F+ +G+    ++  F        + MGF   + +++  Q  P   +RQTLM+SAT+P+EV
Sbjct: 299 FVNRGNVSFNSLKYFVLDEADRMLDMGFLGDVEEMLSHQSMPATGERQTLMFSATFPEEV 358

Query: 603 KKLAEDYLGDYIQINIG 653
           ++LA  +L +YI I +G
Sbjct: 359 QQLAGKFLLNYIFIAVG 375



 Score = 37.9 bits (84), Expect = 8e-05
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = +3

Query: 3   GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 152
           G +   PI  FE +    ++ + VK  GY +PT IQ    P+ +SG++L+
Sbjct: 150 GNDAPPPITSFETSGLRPHLLENVKKSGYTKPTAIQKYAIPVILSGRDLM 199



 Score = 26.2 bits (55), Expect = 0.26
 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
 Frame = +2

Query: 161 RTGSGKTLAYILPAIVHI--NNQPP 229
           +TGSGKT A++LP I ++  +  PP
Sbjct: 203 QTGSGKTAAFMLPIIHNLLSDKNPP 227


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -3

Query: 554 AYLLNDFSDLWFKSHTNIRSASSR 483
           ++L+NDF  +W    + +R+ +SR
Sbjct: 488 SFLVNDFGFIWLVLSSTVRAYASR 511


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 224 VGYLCAQWLARCRPTFCRN 168
           +GY+C   +  CRP  C N
Sbjct: 253 LGYICEINVDDCRPGACHN 271


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,050
Number of Sequences: 336
Number of extensions: 4452
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)