Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00155
(706 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 122 7e-29
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 93 3e-20
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 88 1e-18
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 85 7e-18
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 75 1e-14
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 71 2e-13
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 69 5e-13
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 68 2e-12
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 67 3e-12
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 64 2e-11
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 63 3e-11
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 62 1e-10
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 61 2e-10
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 60 2e-10
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 60 2e-10
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 53 5e-08
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 50 2e-07
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 50 3e-07
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 50 4e-07
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 50 4e-07
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 48 1e-06
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 43 4e-05
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 39 8e-04
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 30 0.37
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1... 28 1.5
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 28 1.5
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 28 1.5
SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar... 26 6.0
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2... 26 6.0
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 26 6.0
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ... 25 8.0
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 8.0
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 122 bits (293), Expect = 7e-29
Identities = 59/84 (70%), Positives = 66/84 (78%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 435
LVLAPTRELA QIQQ FG +S +RNTCV+GG P+ Q RDL RGVEI IATPGRL+D
Sbjct: 199 LVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGRLLD 258
Query: 436 FLEKGTTNLQRCTYLVLDEADRML 507
L+ TNL+R TYLVLDEADRML
Sbjct: 259 MLDSNKTNLRRVTYLVLDEADRML 282
Score = 110 bits (265), Expect = 2e-25
Identities = 47/64 (73%), Positives = 59/64 (92%)
Frame = +3
Query: 510 MGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQ 689
MGFEPQIRKI++QIRPDRQT+M+SATWPKEV++LA DYL DYIQ+ +GSL L+A+HNI Q
Sbjct: 284 MGFEPQIRKIVDQIRPDRQTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQ 343
Query: 690 IVDI 701
IV++
Sbjct: 344 IVEV 347
Score = 70.5 bits (165), Expect = 2e-13
Identities = 28/52 (53%), Positives = 40/52 (76%)
Frame = +3
Query: 3 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGV 158
G+ V P+ FEEA FP+YV + VK +G++ PTPIQ Q WP+AMSG+++VG+
Sbjct: 114 GLNVPKPVTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGI 165
Score = 53.2 bits (122), Expect = 3e-08
Identities = 24/31 (77%), Positives = 26/31 (83%)
Frame = +2
Query: 164 TGSGKTLAYILPAIVHINNQPPIRRGDGPIV 256
TGSGKTL+Y LPAIVHIN QP + GDGPIV
Sbjct: 168 TGSGKTLSYCLPAIVHINAQPLLSPGDGPIV 198
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 93.5 bits (222), Expect = 3e-20
Identities = 46/86 (53%), Positives = 57/86 (66%), Gaps = 3/86 (3%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 435
+++ PTRELA QI + F +R C +GGAP ++Q DL+RG EIV+ TPGR+ID
Sbjct: 495 IIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVVCTPGRMID 554
Query: 436 FLEKG---TTNLQRCTYLVLDEADRM 504
L TNL RCTYLVLDEADRM
Sbjct: 555 VLSANAGRVTNLHRCTYLVLDEADRM 580
Score = 59.7 bits (138), Expect = 4e-10
Identities = 27/64 (42%), Positives = 45/64 (70%)
Frame = +3
Query: 510 MGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQ 689
+GFEPQ+ +II IRPDRQT+++SAT+P+ ++ LA L ++I +G + A+ + Q
Sbjct: 583 LGFEPQVMRIINNIRPDRQTVLFSATFPRAMEALARKVLKKPVEITVGGRSVVAS-EVEQ 641
Query: 690 IVDI 701
IV++
Sbjct: 642 IVEV 645
Score = 45.2 bits (102), Expect = 9e-06
Identities = 17/31 (54%), Positives = 25/31 (80%)
Frame = +2
Query: 161 RTGSGKTLAYILPAIVHINNQPPIRRGDGPI 253
+TGSGKT+A++LP HI +Q P++ G+GPI
Sbjct: 463 KTGSGKTIAFLLPMFRHIKDQRPLKTGEGPI 493
Score = 38.7 bits (86), Expect = 8e-04
Identities = 15/52 (28%), Positives = 29/52 (55%)
Frame = +3
Query: 3 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGV 158
G++ P+ + + + ++GY++PT IQAQ P SG++++GV
Sbjct: 410 GIDCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGV 461
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 88.2 bits (209), Expect = 1e-18
Identities = 41/84 (48%), Positives = 59/84 (70%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 435
L+LAPTREL QI + + F + S+VR V+GGA R Q R +++G +++ ATPGRL+D
Sbjct: 259 LILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGRLVD 318
Query: 436 FLEKGTTNLQRCTYLVLDEADRML 507
+++G +L +LVLDEADRML
Sbjct: 319 LIDRGRISLANIKFLVLDEADRML 342
Score = 58.8 bits (136), Expect = 7e-10
Identities = 31/66 (46%), Positives = 46/66 (69%), Gaps = 4/66 (6%)
Frame = +3
Query: 510 MGFEPQIRKIIEQIR----PDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANH 677
MGFEPQIR I+E +RQTLM+SAT+P++++ LA D+L DY+ +++G + S +
Sbjct: 344 MGFEPQIRHIVEGADMTSVEERQTLMFSATFPRDIQLLARDFLKDYVFLSVGRVG-STSE 402
Query: 678 NILQIV 695
NI Q V
Sbjct: 403 NITQKV 408
Score = 38.3 bits (85), Expect = 0.001
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 21 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 152
P+ F ++ Q +K GY +PTP+Q PI SG++L+
Sbjct: 167 PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLM 210
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 85.4 bits (202), Expect = 7e-18
Identities = 47/97 (48%), Positives = 57/97 (58%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 435
+VLAPTRELAQQIQ F R V GG EQ+ + +G IV+ATPGRL+D
Sbjct: 329 VVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVATPGRLLD 388
Query: 436 FLEKGTTNLQRCTYLVLDEADRMLVWDLNHKSEKSLS 546
LE+ L +CTY+V+DEADRML K LS
Sbjct: 389 CLERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILS 425
Score = 46.0 bits (104), Expect = 5e-06
Identities = 19/54 (35%), Positives = 34/54 (62%)
Frame = +3
Query: 3 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVPE 164
G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K+L+G+ E
Sbjct: 241 GDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAE 294
Score = 34.7 bits (76), Expect = 0.013
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +3
Query: 561 RQTLMWSATWPKEVKKLAEDYLGDYIQINIGSL 659
RQT+M+SAT P V LA+ YL + + + IG++
Sbjct: 450 RQTIMFSATLPPRVANLAKSYLIEPVMLTIGNI 482
Score = 33.5 bits (73), Expect = 0.030
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +2
Query: 164 TGSGKTLAYILPAIVHINNQPPI 232
TGSGKT A+I+P I+ I+ PP+
Sbjct: 295 TGSGKTAAFIIPLIIAISKLPPL 317
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 74.5 bits (175), Expect = 1e-14
Identities = 38/84 (45%), Positives = 53/84 (63%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 435
LV++PTRELA Q + + ++ V+GGAPK EQAR + ++I TPGRL+D
Sbjct: 240 LVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQAR-AAKNASVIIGTPGRLLD 298
Query: 436 FLEKGTTNLQRCTYLVLDEADRML 507
+ G+ + + YLVLDEADRML
Sbjct: 299 LINDGSIDCSQVGYLVLDEADRML 322
Score = 60.1 bits (139), Expect = 3e-10
Identities = 34/69 (49%), Positives = 45/69 (65%), Gaps = 6/69 (8%)
Frame = +3
Query: 513 GFEPQIRKIIEQIRPD------RQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSAN 674
GFE IR II PD RQT+ +SATWP+ V+ LA +L D ++I IGS +L+A+
Sbjct: 325 GFEQDIRNIISHT-PDPTRNGSRQTVFFSATWPESVRALAATFLKDPVKITIGSDELAAS 383
Query: 675 HNILQIVDI 701
NI QIV+I
Sbjct: 384 QNITQIVEI 392
Score = 48.4 bits (110), Expect = 1e-06
Identities = 21/48 (43%), Positives = 33/48 (68%)
Frame = +3
Query: 21 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVPE 164
PI F+E + +++G+K YKEPTPIQA WP ++G+++VG+ E
Sbjct: 165 PILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGRDVVGIAE 210
Score = 27.5 bits (58), Expect = 2.0
Identities = 10/18 (55%), Positives = 16/18 (88%)
Frame = +2
Query: 164 TGSGKTLAYILPAIVHIN 217
TGSGKT+A+ +PA+ ++N
Sbjct: 211 TGSGKTVAFGIPALQYLN 228
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 70.5 bits (165), Expect = 2e-13
Identities = 38/105 (36%), Positives = 54/105 (51%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 435
L+L PTRELA Q QV G V+ GG R+ L V IV+ TPGR++D
Sbjct: 116 LILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLD 175
Query: 436 FLEKGTTNLQRCTYLVLDEADRMLVWDLNHKSEKSLSKYAQTDRL 570
KG + CT V+DEAD++L + E+ LS + + ++
Sbjct: 176 LAGKGVADFSECTTFVMDEADKLLSPEFTPIIEQLLSYFPKNRQI 220
Score = 33.1 bits (72), Expect = 0.040
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +3
Query: 33 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 152
FE+ + G+ G++ P+PIQ + PIA+SG++++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDIL 85
Score = 30.7 bits (66), Expect = 0.21
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 516 FEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINI 650
F P I +++ +RQ ++SAT+P VK + +L +IN+
Sbjct: 203 FTPIIEQLLSYFPKNRQISLYSATFPLIVKNFMDKHLNKPYEINL 247
Score = 25.4 bits (53), Expect = 8.0
Identities = 7/23 (30%), Positives = 17/23 (73%)
Frame = +2
Query: 155 RTRTGSGKTLAYILPAIVHINNQ 223
R + G+GKT A+++P++ ++ +
Sbjct: 87 RAKNGTGKTAAFVIPSLEKVDTK 109
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 69.3 bits (162), Expect = 5e-13
Identities = 36/84 (42%), Positives = 46/84 (54%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 435
L+LAPTRELAQQIQ+V G V GG R+ L+ GV +V+ TPGR+ D
Sbjct: 91 LILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQAGVHVVVGTPGRVHD 150
Query: 436 FLEKGTTNLQRCTYLVLDEADRML 507
+++ VLDEAD ML
Sbjct: 151 MIQRRALPTDAVQMFVLDEADEML 174
Score = 33.5 bits (73), Expect = 0.030
Identities = 16/52 (30%), Positives = 31/52 (59%)
Frame = +3
Query: 513 GFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLS 668
GF+ QI I + + P Q ++ SAT P++V ++ ++ D I+I + +L+
Sbjct: 177 GFKDQIYDIFQLLPPTAQVVLLSATMPQDVLEVTTKFMRDPIRILVKKDELT 228
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 67.7 bits (158), Expect = 2e-12
Identities = 41/98 (41%), Positives = 57/98 (58%), Gaps = 2/98 (2%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 435
+VLAPTRELA QI + G + VR+ + GG QA L + +++ TPGRL+D
Sbjct: 118 VVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLMD 177
Query: 436 FLE--KGTTNLQRCTYLVLDEADRMLVWDLNHKSEKSL 543
LE KG +L+ YL++DEADR+L D +K L
Sbjct: 178 HLENTKG-FSLKNLKYLIMDEADRLLDMDFGPIIDKIL 214
Score = 35.1 bits (77), Expect = 0.010
Identities = 12/44 (27%), Positives = 28/44 (63%)
Frame = +3
Query: 33 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVPE 164
F+E D + + + +G+K PTPIQ + P+ ++ ++++G+ +
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQ 91
Score = 28.7 bits (61), Expect = 0.86
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 161 RTGSGKTLAYILPAIVHINNQP 226
+TGSGKT A+ LP I + N P
Sbjct: 91 QTGSGKTAAFALPVIQELWNNP 112
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 66.9 bits (156), Expect = 3e-12
Identities = 36/88 (40%), Positives = 52/88 (59%), Gaps = 4/88 (4%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 435
L+L PTRELA QI + A G +++ + GG Q+ DL + +V+ATPGRL D
Sbjct: 79 LILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRPHVVVATPGRLAD 138
Query: 436 FL----EKGTTNLQRCTYLVLDEADRML 507
+ E+ L+R +LV+DEADR+L
Sbjct: 139 LIRSNGEETIAGLRRIKFLVMDEADRLL 166
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 161 RTGSGKTLAYILPAIVHINNQP 226
+TGSGKT A+ LP I + P
Sbjct: 52 KTGSGKTAAFALPIIEKWSKDP 73
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 63.7 bits (148), Expect = 2e-11
Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 435
++++PTRELA QI VA + + V GGA +R +A L +GV +++ATPGRL+D
Sbjct: 165 IIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADKLVKGVNLLVATPGRLLD 224
Query: 436 FLE--KGTTNLQRCTYLVLDEADRML 507
L+ KG + LV+DEADR+L
Sbjct: 225 HLQNTKGFV-FRNLRSLVIDEADRIL 249
Score = 29.5 bits (63), Expect = 0.49
Identities = 15/36 (41%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Frame = +3
Query: 510 MGFEPQIRKIIEQIRPD-RQTLMWSATWPKEVKKLA 614
+GFE ++R+I++ + + RQTL++SAT +V+ LA
Sbjct: 251 IGFEDEMRQIMKILPSENRQTLLFSATQTTKVEDLA 286
Score = 27.9 bits (59), Expect = 1.5
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +2
Query: 161 RTGSGKTLAYILPAI 205
+TGSGKTLA+++P I
Sbjct: 134 KTGSGKTLAFLIPTI 148
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 63.3 bits (147), Expect = 3e-11
Identities = 36/101 (35%), Positives = 56/101 (55%), Gaps = 4/101 (3%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGH---TSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 426
+++APTREL QQI VA + + ++ + V GG K+ + + +GV I+I TPGR
Sbjct: 220 VIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVNILIGTPGR 279
Query: 427 LIDFLEK-GTTNLQRCTYLVLDEADRMLVWDLNHKSEKSLS 546
L D LE ++ + ++VLDE DR++ K LS
Sbjct: 280 LADHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKILS 320
Score = 29.9 bits (64), Expect = 0.37
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 161 RTGSGKTLAYILPAIVHINNQP 226
+TGSGKTLAY+LP + + P
Sbjct: 186 QTGSGKTLAYLLPIVQRLIRLP 207
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 61.7 bits (143), Expect = 1e-10
Identities = 40/110 (36%), Positives = 57/110 (51%), Gaps = 2/110 (1%)
Frame = +1
Query: 184 GLHLASHCAHK*PTAYSER*WSDCLVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAP 363
G+ + HC Y + LV+APTRELA QI Q + +R + GG
Sbjct: 177 GIPILEHCLRNVDAKYVQ-----ALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLA 231
Query: 364 KREQARDLERGVEIVIATPGRLIDFLEKG--TTNLQRCTYLVLDEADRML 507
++Q R L + +V+ATPGRL + + T N ++ LVLDEADR+L
Sbjct: 232 VQKQQRLLNKHPHVVVATPGRLWSVINENNLTGNFKKIKCLVLDEADRLL 281
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 164 TGSGKTLAYILPAIVH 211
TGSGKTLA+ +P + H
Sbjct: 168 TGSGKTLAFGIPILEH 183
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 60.9 bits (141), Expect = 2e-10
Identities = 32/83 (38%), Positives = 45/83 (54%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 435
L+L+P RELA Q +V DF + +R+ + GG EQ L +IV+ATPGR +
Sbjct: 143 LILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGKPDIVVATPGRFLH 202
Query: 436 FLEKGTTNLQRCTYLVLDEADRM 504
+ L Y+V DEADR+
Sbjct: 203 LKVEMKLELSSIEYVVFDEADRL 225
Score = 34.7 bits (76), Expect = 0.013
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +3
Query: 510 MGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINI 650
MGF Q+ +I+ + RQTL++SAT P+ + A+ L D + + +
Sbjct: 228 MGFAAQLTEILHALPTSRQTLLFSATLPRTLVDFAKAGLQDPVLVRL 274
Score = 31.5 bits (68), Expect = 0.12
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +3
Query: 33 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGV 158
F+ + + + G+K PTPIQ + P+ + G+++VG+
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGM 112
Score = 30.7 bits (66), Expect = 0.21
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +2
Query: 161 RTGSGKTLAYILPAIVHINN 220
RTGSGKT A+++P I H+ +
Sbjct: 114 RTGSGKTAAFVIPMIEHLKS 133
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 60.5 bits (140), Expect = 2e-10
Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 435
L+L PTRELA Q VA + + GG + Q ++L + +IVIATPGR ID
Sbjct: 334 LILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRKRPDIVIATPGRFID 393
Query: 436 FLEKGT-TNLQRCTYLVLDEADRML 507
+ ++ +V+DEADRML
Sbjct: 394 HMRNSQGFTVENIEIMVMDEADRML 418
Score = 35.1 bits (77), Expect = 0.010
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +3
Query: 33 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 155
F+ N + +G+ +G++ PT IQ + P+A+ GK++VG
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVG 301
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/53 (26%), Positives = 29/53 (54%)
Frame = +3
Query: 513 GFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSA 671
GF ++ +II+ RQT+++SAT +V L L +++ + + + +A
Sbjct: 421 GFADELNEIIQACPKSRQTMLFSATMTDKVDDLIRLSLNRPVRVFVDNKKTTA 473
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 164 TGSGKTLAYILPAIVHINNQP 226
TGSGKT A+I+P + + +P
Sbjct: 305 TGSGKTAAFIVPILERLLYRP 325
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 60.5 bits (140), Expect = 2e-10
Identities = 31/87 (35%), Positives = 44/87 (50%)
Frame = +1
Query: 247 SDCLVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 426
+ L+L+PTRELA QIQ V G V+ GG + L+ G +V TPGR
Sbjct: 90 TQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYGQHVVSGTPGR 149
Query: 427 LIDFLEKGTTNLQRCTYLVLDEADRML 507
+ D + + + L+LDEAD +L
Sbjct: 150 VTDMIRRRNLRTRNVKMLILDEADELL 176
Score = 29.5 bits (63), Expect = 0.49
Identities = 11/45 (24%), Positives = 25/45 (55%)
Frame = +3
Query: 18 NPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 152
N + FEE N + + +G+ GY+ P+ +Q++ G++++
Sbjct: 18 NAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVI 62
Score = 28.7 bits (61), Expect = 0.86
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +3
Query: 504 VGMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQI 644
+ GF+ QI I + P Q ++ SAT P++V ++ + + ++I
Sbjct: 176 LNQGFKEQIYDIYRYLPPGTQVVVVSATLPQDVLEMTNKFTTNPVRI 222
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 52.8 bits (121), Expect = 5e-08
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERG-VEIVIATPGRLI 432
++L+PTRELA QI + A + + +R + GG K + + RG ++IATPGRL
Sbjct: 116 VILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRLE 175
Query: 433 DFLEKGTTNLQRCT-YLVLDEADRML 507
D L+ T +LDEADR++
Sbjct: 176 DHLQNPRILESLSTDSFILDEADRLM 201
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 50.4 bits (115), Expect = 2e-07
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 435
LV++PTRELA Q + G + GG +E+ L R + I++ TPGRL+
Sbjct: 115 LVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERLSR-MNILVCTPGRLLQ 173
Query: 436 FLEKGTT-NLQRCTYLVLDEADRML 507
+++ + L+LDEADR+L
Sbjct: 174 HIDQAVNFDTSGLQMLILDEADRIL 198
Score = 31.9 bits (69), Expect = 0.092
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 510 MGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLA 614
MGF + I+ + RQT+++SAT K VK LA
Sbjct: 200 MGFRTTLDAIVSSLPVHRQTMLFSATQTKSVKDLA 234
Score = 28.3 bits (60), Expect = 1.1
Identities = 11/18 (61%), Positives = 16/18 (88%)
Frame = +2
Query: 161 RTGSGKTLAYILPAIVHI 214
+TGSGKTLA+I+P I ++
Sbjct: 84 KTGSGKTLAFIVPLIENL 101
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 50.0 bits (114), Expect = 3e-07
Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 2/100 (2%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGH--TSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRL 429
L+L PTRELAQQ+ V + ++R V + Q L +IVIATP R
Sbjct: 92 LLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQRPLLLDLPDIVIATPSRC 151
Query: 430 IDFLEKGTTNLQRCTYLVLDEADRMLVWDLNHKSEKSLSK 549
+ + G L + +LV+DEAD ML + N + K+LS+
Sbjct: 152 VVHVASGVLPLDKLKFLVIDEADLMLSFGYN-EDMKTLSR 190
Score = 33.5 bits (73), Expect = 0.030
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = +3
Query: 3 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 152
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+LV
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLV 55
Score = 31.9 bits (69), Expect = 0.092
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Frame = +2
Query: 140 KEFSWRTRTGSGKTLAYILPAIVHINNQPPI---RRGDGP--IVWSWRLPES*HNKFSKL 304
K+ + RTGSGKT AY++P + + Q I +RG +V + L + +N KL
Sbjct: 52 KDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKL 111
Query: 305 LQILDTHLMFV 337
H+ F+
Sbjct: 112 TAFCSKHIRFI 122
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 49.6 bits (113), Expect = 4e-07
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 6/91 (6%)
Frame = +1
Query: 253 CLVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDL-----ERGVEIVIAT 417
C+V+ PTREL Q+ + + + ++ G R + L E ++++++T
Sbjct: 208 CVVIVPTRELTVQVAKTFEYYMSGAGLQVCAWTGQKSLRHETYQLNGDENECRIDVLVST 267
Query: 418 PGRLIDFLEKGTT-NLQRCTYLVLDEADRML 507
PGRL+D + + +LQ Y+V+DEADR+L
Sbjct: 268 PGRLVDHIRNDESFSLQHLRYMVIDEADRLL 298
Score = 27.1 bits (57), Expect = 2.6
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +2
Query: 164 TGSGKTLAYILPAI 205
TGSGKTL+Y++P +
Sbjct: 182 TGSGKTLSYVIPIV 195
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 49.6 bits (113), Expect = 4e-07
Identities = 30/84 (35%), Positives = 46/84 (54%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 435
+ LAP+RELA+QI V + G + V+ FG K + + +IVI TPG ++D
Sbjct: 188 ICLAPSRELARQIMDVVTEMGKYTEVKTA--FG--IKDSVPKGAKIDAQIVIGTPGTVMD 243
Query: 436 FLEKGTTNLQRCTYLVLDEADRML 507
+++ + + VLDEAD ML
Sbjct: 244 LMKRRQLDARDIKVFVLDEADNML 267
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 48.0 bits (109), Expect = 1e-06
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFGGAPKR---EQARDLERGVEIVIATPG 423
LVL TRELA QI+ A F + VR +GG + E +D + IV+ATPG
Sbjct: 123 LVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIVVATPG 182
Query: 424 RLIDFLEKGTTNLQRCTYLVLDEADRML 507
RL + + + + VLDE D++L
Sbjct: 183 RLNALVREKILKVNSVKHFVLDECDKLL 210
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 43.2 bits (97), Expect = 4e-05
Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPK-REQARDLERGVEIVIATPGRLI 432
+++APTREL +QI + A + ++ + K +E+A L ++ I TP RL+
Sbjct: 119 IIVAPTRELCEQIYRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKYDMCIGTPMRLV 178
Query: 433 DFLEKGTTNLQRCTYLVLDEADRM 504
++ G + ++ + V+DEADR+
Sbjct: 179 QAIQTG-LSFEKVEFFVMDEADRL 201
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 164 TGSGKTLAYILPAIVHINNQPP 229
TGSGKT+AY+ P + + P
Sbjct: 92 TGSGKTIAYLFPILQKLQLHVP 113
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 38.7 bits (86), Expect = 8e-04
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADF---------GHTSYVRNTCVFG-GAPKREQARDLERGVEI 405
L++APTRELA QI V + G V + + G G + A E+ +
Sbjct: 76 LIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTLTNDLASFREKNPSV 135
Query: 406 VIATPGRLIDFLEKGTTNLQRCTYLVLDEADRML 507
VI TPGRL + L + + L+LDEAD ++
Sbjct: 136 VIGTPGRLNEMLSH--ISSKHLEILILDEADTLI 167
Score = 34.3 bits (75), Expect = 0.017
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 33 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 152
F+ N +++ V G+K+ TP+QA P+ + K+LV
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLV 42
Score = 30.3 bits (65), Expect = 0.28
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 164 TGSGKTLAYILPAIVHINNQPPIRRGDGPIV 256
TGSGKTLAY+LP + + G G ++
Sbjct: 47 TGSGKTLAYLLPCFDKVTRRDTDETGLGALI 77
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 504 VGMGFEPQIRKIIEQIRPDRQTLMWSAT 587
+ MGF+ ++ II Q+ R+T ++SAT
Sbjct: 167 IDMGFQRTLQSIISQLPKQRRTGLFSAT 194
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 29.9 bits (64), Expect = 0.37
Identities = 22/73 (30%), Positives = 35/73 (47%)
Frame = +1
Query: 262 LAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFL 441
L TR +++ Q DF G P R L++G+E VI TP RL+
Sbjct: 99 LVCTRSISRHSNQKLLDFCVECKKHKIKCVGNFPC---GRCLKKGLECVIETPPRLLMNK 155
Query: 442 EKGTTNLQRCTYL 480
++ + NLQR +++
Sbjct: 156 DEISLNLQRLSHM 168
>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1004
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 167 GSGKTLAYILPAIVHINNQPPIRRGDGPIVWSWRLPE 277
GSG+TLA + P ++ +N + +W+W L E
Sbjct: 842 GSGRTLANLAPMMLITHNASHVPPRPSKSLWNWLLGE 878
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.9 bits (59), Expect = 1.5
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +2
Query: 164 TGSGKTLAYILPAIVHINNQPP 229
TG GK+L++++PA++ Q P
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP 1236
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.9 bits (59), Expect = 1.5
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +2
Query: 164 TGSGKTLAYILPAIVHINNQPP 229
TG GK+L++++PA++ Q P
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP 1236
>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 25.8 bits (54), Expect = 6.0
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Frame = +1
Query: 304 AADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR-LIDFL---EKGTTNLQRC 471
A FG S + C G KR RD+ G + ++ PG +D L K +L
Sbjct: 215 APKFGDRSCYQLPCNARGLAKRAILRDVREGADGIMVKPGTPYLDILAMASKLADDLPIA 274
Query: 472 TYLVLDE 492
TY V E
Sbjct: 275 TYQVSGE 281
>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 540 IEQIRPDRQTLMWSATWPKEVKKLAED 620
I + R +R TL S +P+E K L+ED
Sbjct: 268 IRKKRSERDTLNVSTEFPEETKDLSED 294
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 25.8 bits (54), Expect = 6.0
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = +1
Query: 262 LAPTRELAQQIQQVAADFGHTSYVRN-TCVFGGAPKREQARDLERGVEIVIATPGRLIDF 438
+APT+ L Q Q+ A + T ++ T G + + TP +++
Sbjct: 122 MAPTKPLVTQ--QMEACYKITGIPKSQTAELSGHVPVTTRNQYYQSRNVFFVTPQTILND 179
Query: 439 LEKGTTNLQRCTYLVLDEADR 501
++ G + R + LV+DEA R
Sbjct: 180 IKHGICDRTRISCLVIDEAHR 200
>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 495
Score = 25.4 bits (53), Expect = 8.0
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +2
Query: 83 GLQRTDAHSSSRLADSYVWKEFSWRTRTGSGKTLAYILPAIVHINNQPPIRRGDG 247
G+Q D + +LAD + +S T GK + Y +P V + ++ I+ G G
Sbjct: 82 GVQGNDFLFNGKLADLNAEEAYSHLTTPVFGKDVVYDIPNHVFMEHKKFIKSGLG 136
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -2
Query: 84 PLSLHLVAHNQENL--LLQSIE 25
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,192,835
Number of Sequences: 5004
Number of extensions: 70772
Number of successful extensions: 270
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -