Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00154
         (799 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       22   6.5  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       22   6.5  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    21   8.6  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 725 RTSHESWCFSTSAESDGLSRLPHL 796
           R +H SW    S   D L+ +PH+
Sbjct: 313 RENHASWVNHLSNIEDCLNYVPHI 336


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 173 NSCCRSLSTDGRRAGFDCNC 114
           N C  + S   R A F+CNC
Sbjct: 113 NPCRNNGSCVDRIADFECNC 132


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 193 AKSPMRRIHAAEVC 152
           AK PMR +H   VC
Sbjct: 187 AKPPMRVLHQCPVC 200


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,770
Number of Sequences: 336
Number of extensions: 4185
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21687721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)