Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00154
(799 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47948| Best HMM Match : No HMM Matches (HMM E-Value=.) 85 8e-17
SB_59029| Best HMM Match : Pkinase (HMM E-Value=0) 79 3e-15
SB_16221| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.009
SB_3748| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.088
SB_22253| Best HMM Match : Pkinase (HMM E-Value=0) 33 0.20
SB_26666| Best HMM Match : Pkinase (HMM E-Value=3.7e-38) 33 0.20
SB_42711| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.35
SB_50358| Best HMM Match : DSL (HMM E-Value=6.2e-13) 29 3.3
SB_45517| Best HMM Match : Sushi (HMM E-Value=6.8) 29 4.4
SB_30264| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_28272| Best HMM Match : EGF (HMM E-Value=2.6e-15) 29 5.8
SB_37171| Best HMM Match : EGF (HMM E-Value=2.6e-15) 29 5.8
SB_51817| Best HMM Match : Avirulence (HMM E-Value=1.2) 28 7.6
SB_17844| Best HMM Match : Fibrinogen_C (HMM E-Value=0) 28 7.6
SB_17729| Best HMM Match : TPR_2 (HMM E-Value=0.41) 28 7.6
SB_982| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_46601| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_9949| Best HMM Match : PetM (HMM E-Value=2.2) 28 7.6
>SB_47948| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 641
Score = 84.6 bits (200), Expect = 8e-17
Identities = 41/80 (51%), Positives = 54/80 (67%), Gaps = 2/80 (2%)
Frame = +1
Query: 1 GKPPFETSTLKDTYKRIKQCEYRIPSSLRKPAASMIVLQLQSNPARRPSVDKLLQHEFF- 177
GKPPFET +LK TY RIK+ EY IPS + A +I+ L+ +P RP++ ++L +FF
Sbjct: 233 GKPPFETQSLKTTYDRIKRNEYYIPSKVSHTAQLLIIKLLRPDPTTRPTMQQVLDDDFFK 292
Query: 178 -SSGILPAGLPVSCLTTAPR 234
SSG +P LPVSCLT PR
Sbjct: 293 PSSGYMPTRLPVSCLTMPPR 312
Score = 80.2 bits (189), Expect = 2e-15
Identities = 35/61 (57%), Positives = 44/61 (72%)
Frame = +1
Query: 508 VDYSDKYGFGYQLCDESVGVMFNDTTKLIMLANGLNVHYINRQGQEQYMTMRDYPQELDK 687
VDYSDKYG GY L D SVGV+FND T+LI+ +G N+ YI + GQE + TM+ +P L K
Sbjct: 434 VDYSDKYGLGYTLSDNSVGVLFNDHTRLILCEDGENLQYILKNGQESFHTMKGFPDSLHK 493
Query: 688 K 690
K
Sbjct: 494 K 494
Score = 42.3 bits (95), Expect = 4e-04
Identities = 19/39 (48%), Positives = 23/39 (58%)
Frame = +3
Query: 636 GPRAVHDDARLPARTRQKMKLLTYFRRYMTEHLMKAGAS 752
G + H P +K+ LL YFR YMTEHL+KAG S
Sbjct: 477 GQESFHTMKGFPDSLHKKVTLLKYFRNYMTEHLLKAGGS 515
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 395 LRDQLAALLVNKLKCRPEALTDELSDPAAQPLVWVGKW 508
L+ QL LL D+ +PAA P+ WV KW
Sbjct: 396 LKKQLTNLLALNPADMKYKNEDDAEEPAATPVYWVSKW 433
>SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 1023
Score = 79.4 bits (187), Expect = 3e-15
Identities = 34/83 (40%), Positives = 50/83 (60%)
Frame = +1
Query: 1 GKPPFETSTLKDTYKRIKQCEYRIPSSLRKPAASMIVLQLQSNPARRPSVDKLLQHEFFS 180
G PPFET +L++TY+RI+ +Y IPS + AA +I L +NP RP + + +FF+
Sbjct: 627 GHPPFETKSLRETYRRIRNNDYTIPSRVSDSAARLIQRMLHANPENRPKLSDIFSDDFFA 686
Query: 181 SGILPAGLPVSCLTTAPRTDQLE 249
G LP LP++CL P+ E
Sbjct: 687 KGFLPNELPLTCLCGTPKWSDYE 709
Score = 43.2 bits (97), Expect = 3e-04
Identities = 19/39 (48%), Positives = 27/39 (69%)
Frame = +1
Query: 508 VDYSDKYGFGYQLCDESVGVMFNDTTKLIMLANGLNVHY 624
VDYS+KYGFG QL D V V FND +K+ + ++ ++ Y
Sbjct: 845 VDYSNKYGFGAQLSDGCVTVRFNDCSKIALASDKRSICY 883
Score = 34.3 bits (75), Expect = 0.12
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 666 LPARTRQKMKLLTYFRRYMTEHLMKAG 746
+P+ K+ LLTYF YM +HL+K G
Sbjct: 898 VPSNLHSKVTLLTYFANYMDKHLLKGG 924
>SB_16221| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 834
Score = 37.9 bits (84), Expect = 0.009
Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +1
Query: 1 GKPPFETSTLKDTYKRIKQCEYRIPSSLRKPAASMIVLQLQSNPARRPSVDKLLQHEFFS 180
G+ PF + +T +I C Y +P + ++I L P +R S+ +++ H +
Sbjct: 112 GQAPFSEANDSETLTKIMDCRYDVPDHVSPLCKNLISRMLIREPHKRASLGEIMSHPWLQ 171
Query: 181 SG---ILPAGLPV 210
G ++P+ +P+
Sbjct: 172 QGPTPLVPSDVPL 184
>SB_3748| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 761
Score = 34.7 bits (76), Expect = 0.088
Identities = 16/61 (26%), Positives = 32/61 (52%)
Frame = +1
Query: 1 GKPPFETSTLKDTYKRIKQCEYRIPSSLRKPAASMIVLQLQSNPARRPSVDKLLQHEFFS 180
G+ PF S + +I++ + IP ++ A +I ++ +P R ++L+H +FS
Sbjct: 668 GRYPFHDSEPTALFTKIRRGHFAIPDTVSSKAKCLIRSMMRRDPDERLMASEVLEHPWFS 727
Query: 181 S 183
S
Sbjct: 728 S 728
>SB_22253| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 870
Score = 33.5 bits (73), Expect = 0.20
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = +1
Query: 7 PPFETSTLKDTYKRIKQCEYRIPSSLRKPAASMIVLQLQSNPARRPSVDKLLQHEFF 177
P F L D K ++ E R P + A M+ L L+ +P+ RP+ +LL H+FF
Sbjct: 178 PLFVGMRLPDI-KEVEPMERRFPR-ISPMAVDMLKLCLKMDPSERPTCAQLLNHDFF 232
>SB_26666| Best HMM Match : Pkinase (HMM E-Value=3.7e-38)
Length = 1215
Score = 33.5 bits (73), Expect = 0.20
Identities = 16/60 (26%), Positives = 31/60 (51%)
Frame = +1
Query: 1 GKPPFETSTLKDTYKRIKQCEYRIPSSLRKPAASMIVLQLQSNPARRPSVDKLLQHEFFS 180
G PF+ STL+ R+ +RIP + +I L +P +R ++ ++ QH++ +
Sbjct: 159 GALPFDGSTLQSLRSRVLDGRFRIPFFMSTECEHLIRHMLVRDPVKRFTIPQIRQHKWMA 218
>SB_42711| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 920
Score = 32.7 bits (71), Expect = 0.35
Identities = 15/61 (24%), Positives = 34/61 (55%)
Frame = +1
Query: 1 GKPPFETSTLKDTYKRIKQCEYRIPSSLRKPAASMIVLQLQSNPARRPSVDKLLQHEFFS 180
G PF+ STL+ R+ + ++RIP + +I L +P +R +++++ +H++
Sbjct: 350 GALPFDGSTLQALRDRVLEGKFRIPFFMSTECEHLIRHMLVKDPNQRYTIEQIQKHKWLQ 409
Query: 181 S 183
+
Sbjct: 410 A 410
>SB_50358| Best HMM Match : DSL (HMM E-Value=6.2e-13)
Length = 557
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 566 TPTLSSQSWYPNPYLSL*STTCQPTP 489
TP L++Q W P P L+ + C PTP
Sbjct: 253 TPLLTTQKWSPTPLLT--TQKCSPTP 276
>SB_45517| Best HMM Match : Sushi (HMM E-Value=6.8)
Length = 216
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -1
Query: 421 QQCSELVSQCNKILAVRRWFHGSWP 347
QQ +E++SQ L++ WFHGS P
Sbjct: 82 QQVAEVLSQDKTRLSISGWFHGSPP 106
>SB_30264| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 689
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = -2
Query: 255 DALELVSARRCGEARDGQPGWQNPR*EEFMLQKFVHGRTTRRVRLQLQYNHGRRRFAK 82
+A++ +AR C + D +PG EE K R R+ L + N G R+F +
Sbjct: 611 EAVQKKAARFCKQCWDREPGTMTRLMEELGWPKLKERREKARLALFYRINKGLRKFPR 668
>SB_28272| Best HMM Match : EGF (HMM E-Value=2.6e-15)
Length = 157
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 200 PAGKIPDEKNSCCRSLSTDGRRAGFDCNCST 108
P G P + NS C + +G+DC CST
Sbjct: 119 PCGSSPCKNNSTC---TNKDENSGYDCTCST 146
>SB_37171| Best HMM Match : EGF (HMM E-Value=2.6e-15)
Length = 186
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 200 PAGKIPDEKNSCCRSLSTDGRRAGFDCNCST 108
P G P + NS C + +G+DC CST
Sbjct: 119 PCGSSPCKNNSTC---TNKDENSGYDCTCST 146
>SB_51817| Best HMM Match : Avirulence (HMM E-Value=1.2)
Length = 643
Score = 28.3 bits (60), Expect = 7.6
Identities = 19/74 (25%), Positives = 30/74 (40%)
Frame = -3
Query: 275 KRAAVYQMPSSWSVRGAVVRQETGSPAGKIPDEKNSCCRSLSTDGRRAGFDCNCSTIMDA 96
++ A+Y + S R + Q+T +P+ + S CR TD D T+
Sbjct: 364 RQCALYIHYPTDSARCTDITQQTVRTVQTLPNRQCSLCRHYPTDSAHC-TDITQQTVRTV 422
Query: 95 AGLRSDDGILYSHC 54
L + LY HC
Sbjct: 423 QTLPNRQWSLYRHC 436
>SB_17844| Best HMM Match : Fibrinogen_C (HMM E-Value=0)
Length = 1431
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 457 RRAERSRSTAAGVGWQVVDYSDKYGFGYQLCDE 555
RR R+ + + W ++ Y DKYG ++ DE
Sbjct: 807 RRTGELRANNSALEWNIIRYLDKYGQRIEIKDE 839
>SB_17729| Best HMM Match : TPR_2 (HMM E-Value=0.41)
Length = 1234
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 124 IATAVQSWTPPVCEATTESCIRTV*SF 44
+ + S TP VCE + SC++TV S+
Sbjct: 794 LQSCANSTTPYVCEQSNSSCVQTVQSY 820
>SB_982| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 557
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +1
Query: 70 IPSSLRKPAASMIVLQLQSNPARRPSVDKLLQHEFFSSGI 189
+P S+I L +P +RPS +LL+H + I
Sbjct: 179 LPKQYSTDLCSIIKSMLDQDPDKRPSASRLLRHPYIKKQI 218
>SB_46601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 880
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 675 LRVIAHRHVLLLALPIDVVHIQSISEHDKLGSIVEH 568
LR + H L ALP+ + + DKLG+ +EH
Sbjct: 95 LRDVLKAHDALAALPMYTTYCTKRNNRDKLGNSIEH 130
>SB_9949| Best HMM Match : PetM (HMM E-Value=2.2)
Length = 299
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 675 LRVIAHRHVLLLALPIDVVHIQSISEHDKLGSIVEH 568
LR + H L ALP+ + + DKLG+ +EH
Sbjct: 95 LRDVLKAHDALAALPMYTTYCTKRNNRDKLGNSIEH 130
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,366,258
Number of Sequences: 59808
Number of extensions: 599676
Number of successful extensions: 2101
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2100
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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