Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00154
         (799 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   2.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   4.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   7.6  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   7.6  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +1

Query: 10  PFETSTLKDTYKRIKQCEYRIPSSLRKPAASMIVLQLQSNPARRPSV 150
           PF T  + DT K      YR  +++ +P    ++++LQ NP +  ++
Sbjct: 247 PFFTRVVTDTIK------YRNDNNIVRPDFINMLMELQKNPQKLENI 287


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 194 GKIPDEKNSCCRSL 153
           G +PDE +S CR +
Sbjct: 632 GTVPDETHSACRDI 645


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 581 LPSLSCSLMD*MCT 622
           LP  +C++MD +CT
Sbjct: 633 LPFFTCNIMDAICT 646


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 14/59 (23%), Positives = 24/59 (40%)
 Frame = +1

Query: 58  CEYRIPSSLRKPAASMIVLQLQSNPARRPSVDKLLQHEFFSSGILPAGLPVSCLTTAPR 234
           C + I  ++++     +  QL S+         + QH   S+    +G  V C T  PR
Sbjct: 247 CYFDIEPTVQQHQPVTVNRQLNSDVQPGHGSPPVKQHRSSSASTTCSGHTVRCFTGGPR 305


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,431
Number of Sequences: 438
Number of extensions: 4884
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)