Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00153
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    26   4.7  
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    25   6.2  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    25   8.1  

>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -1

Query: 478  SNFFLAARCARISAAVICRFSLGGSVGDGLSRGFARRR 365
            S  F    C   + +VI   S GG+   G  RGFA  R
Sbjct: 1434 SPMFEVFACQTYAQSVIANLSFGGARYIGTGRGFATAR 1471


>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -3

Query: 347 ARPNRASGPPEPVLSP 300
           +RP+  S PPEP+LSP
Sbjct: 574 SRPSPLSLPPEPLLSP 589


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -3

Query: 365 GSFPAPA-RPNRASGPPEPVLSPAARRHQVAP 273
           G+  +PA +P     PP P  +PA + H   P
Sbjct: 716 GAVNSPAIKPQVTPAPPTPAPTPAVKHHPPPP 747


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,274,650
Number of Sequences: 5004
Number of extensions: 45748
Number of successful extensions: 150
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)