Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00153
(586 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0161 + 27108920-27109279,27109479-27109598,27110301-271104... 35 0.041
06_02_0135 + 12188739-12189086,12189191-12189272,12189397-121895... 34 0.096
09_04_0254 + 16131779-16132475,16132609-16132768,16132944-161329... 31 0.89
04_03_0572 + 17310729-17310746,17312209-17312902,17312991-173134... 31 0.89
08_01_0963 - 9661699-9661760,9662095-9662818,9662860-9663265,966... 30 1.6
05_07_0290 + 29016410-29018920 30 1.6
11_04_0086 + 13362788-13362937,13363887-13363970,13364233-133642... 29 2.1
06_01_0842 + 6383033-6383430,6383548-6383627,6383974-6384085,638... 29 2.1
04_04_1554 + 34372480-34372587,34372692-34372871,34372985-343730... 29 2.1
10_08_0586 + 19005991-19006273,19006481-19006642,19006741-190067... 29 2.7
10_06_0002 + 9382559-9382937,9383008-9383180,9386752-9386901,938... 29 2.7
04_03_0094 - 11113279-11114469 29 2.7
02_04_0311 + 21936812-21937861 29 2.7
01_06_1315 + 36226262-36226533,36227946-36228060,36228710-362287... 29 3.6
01_06_0141 - 26905855-26906928 29 3.6
10_08_0187 + 15592130-15592512,15592597-15592972 28 4.8
09_06_0096 - 20840855-20841994 28 4.8
08_02_0329 - 15833124-15833825 28 4.8
04_04_0198 + 23502657-23502900,23505228-23505298,23505690-235057... 28 4.8
01_06_0945 + 33217310-33217427,33218820-33219433 28 4.8
08_01_0415 + 3687998-3688096,3688326-3688520,3689219-3689385,368... 28 6.3
01_01_0560 + 4117203-4117458,4119359-4119609,4119691-4119860,412... 28 6.3
11_01_0669 - 5454116-5454153,5454569-5454770,5454865-5455029,545... 27 8.3
04_03_0905 - 20722090-20722207,20722314-20722395,20722698-207228... 27 8.3
01_06_1083 - 34403769-34403774,34403819-34403918,34404235-344043... 27 8.3
>01_06_0161 +
27108920-27109279,27109479-27109598,27110301-27110438,
27110680-27110784,27110883-27111051,27111507-27111583,
27111796-27111840,27111984-27112022,27112374-27112457,
27112846-27112884,27112963-27113025,27113109-27113238,
27113319-27113374
Length = 474
Score = 35.1 bits (77), Expect = 0.041
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = +3
Query: 147 VIGKVDDGSPAETAGLKRGDRILEVNGHSIAGET 248
V+G + DG PA +AG+++GD +L VNG + G++
Sbjct: 190 VLGLILDG-PAHSAGVRQGDELLSVNGIDVMGKS 222
>06_02_0135 +
12188739-12189086,12189191-12189272,12189397-12189527,
12189626-12189712,12189794-12189872,12190520-12190608,
12190765-12190806,12191030-12191149,12191819-12191968,
12192066-12192137,12192293-12192541
Length = 482
Score = 33.9 bits (74), Expect = 0.096
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = +3
Query: 165 DGSPAETAGLKRGDRILEVNGHSIAG 242
+G PA+ AGL GD ++E++G S++G
Sbjct: 223 EGGPADRAGLHGGDELVEIDGKSVSG 248
>09_04_0254 +
16131779-16132475,16132609-16132768,16132944-16132992,
16133158-16133271,16133434-16133958,16135538-16135969,
16138882-16138956,16139530-16139625,16140610-16140725,
16140822-16140992,16141080-16141239,16141328-16141513,
16141624-16141752,16141837-16141915,16142034-16142143
Length = 1032
Score = 30.7 bits (66), Expect = 0.89
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +3
Query: 324 TRCPIWTCRCRKRPLRLANPRDSPSPTEPPKLNLQMTAA 440
+RC + R RK+ L +P SPSP P LQ AA
Sbjct: 126 SRCSSTSSRIRKKFAWLRSPSPSPSPRPPTPAELQREAA 164
>04_03_0572 +
17310729-17310746,17312209-17312902,17312991-17313400,
17325755-17326063
Length = 476
Score = 30.7 bits (66), Expect = 0.89
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +3
Query: 339 WTCRCRKRPLRLANPRDSPS-PTEP 410
WT CR +PLRL +P PS P +P
Sbjct: 377 WTSYCRNQPLRLLSPPPHPSRPLQP 401
>08_01_0963 -
9661699-9661760,9662095-9662818,9662860-9663265,
9663488-9665037
Length = 913
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -2
Query: 207 GRRVLNQRSLPESHRQPYRLLTGFSFFC 124
G ++L+Q LP S + TGFSFFC
Sbjct: 46 GNKLLSQNPLPSSSSRNSTGCTGFSFFC 73
>05_07_0290 + 29016410-29018920
Length = 836
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = -3
Query: 362 SFPAPARPNRASGPPEPVLSPAARRHQVAP*CELPLLVGLAGDTMTVHFED 210
SFP PA P+ P+L+ AA R V P +LV L D +H +D
Sbjct: 12 SFPPPAPPSARPRHAPPLLNAAALRTGVPP-YSAGVLVSLLRDCADLHGDD 61
>11_04_0086 +
13362788-13362937,13363887-13363970,13364233-13364294,
13365146-13365507,13365928-13366142,13366236-13366292
Length = 309
Score = 29.5 bits (63), Expect = 2.1
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -2
Query: 159 PYRLLTGFSFFCVQVKPVAVEVW 91
P++ TGF +CV++ P A+ W
Sbjct: 272 PFKFYTGFPVYCVRIAPHAMMTW 294
>06_01_0842 +
6383033-6383430,6383548-6383627,6383974-6384085,
6384355-6384454,6384682-6384744,6385857-6386011,
6386109-6386286,6386787-6386954
Length = 417
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +3
Query: 360 RPLRLANPRDSPSPTEPPKLNLQMTAAEMRAHLAAKKKFDP 482
RPL+ A+ P+PT+PP+L+L + + R ++ K + P
Sbjct: 5 RPLQPADREWPPNPTKPPRLSLATSICQPR-YINRTKPYPP 44
>04_04_1554 +
34372480-34372587,34372692-34372871,34372985-34373032,
34374061-34374117,34374206-34374307,34374434-34374499,
34374973-34375074,34375116-34375205
Length = 250
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 353 APARPNRASGPPEPVLSPAA 294
+PARP R GP P++ PAA
Sbjct: 61 SPARPRRPPGPKRPLVGPAA 80
>10_08_0586 +
19005991-19006273,19006481-19006642,19006741-19006796,
19006899-19007061,19007753-19007859,19008879-19008945,
19009176-19009375
Length = 345
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = -1
Query: 448 RISAAVICRFSLGGSVGDGLSRGFARRRGLFRHR 347
R+ V R GG G G+SRG A RRG HR
Sbjct: 56 RVVLIVADRGGGGGGRGSGISRGVAIRRGRGGHR 89
>10_06_0002 +
9382559-9382937,9383008-9383180,9386752-9386901,
9387180-9387325,9387416-9387572,9387720-9387778,
9388204-9388360,9389001-9389150,9389280-9389416,
9390071-9390217,9390292-9390393,9390742-9390799,
9391997-9392034,9392124-9392250,9392320-9392493,
9393125-9393256,9393940-9394049,9394752-9394812,
9395036-9395213,9395326-9395531,9395796-9395915,
9396496-9396594,9396983-9397204,9397482-9397621,
9397741-9397852,9398021-9398071,9398151-9398240,
9398397-9398567,9398663-9398815,9399774-9399950,
9400045-9400182,9400295-9400365,9400739-9400838,
9401324-9401380,9401469-9401525,9401619-9401699,
9401782-9401864,9401975-9402110
Length = 1632
Score = 29.1 bits (62), Expect = 2.7
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Frame = +1
Query: 238 PARPTRSGSSHQGAT**RRAAGDSTGSGGPDARFG-RAGAGKDPSA*RTPGTVRRRP 405
P P G G T AAG+ GP G R+G G+ P+ R G R P
Sbjct: 55 PVAPWACGERQAGGTRESAAAGEPRAGEGPGGWEGRRSGGGRAPARRRGGGETRAVP 111
>04_03_0094 - 11113279-11114469
Length = 396
Score = 29.1 bits (62), Expect = 2.7
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -1
Query: 550 HSSRTITVSSRCQTDLRSIGTFLGSNFFLAARCARISAAV--ICRFSLGGS 404
H+S + + R +T LR G G NFF A C + A IC LG S
Sbjct: 242 HASHVVLQAERLRT-LRYKGGLPGENFFSIANCGDVLAMTIDICESLLGKS 291
>02_04_0311 + 21936812-21937861
Length = 349
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/46 (34%), Positives = 19/46 (41%)
Frame = -1
Query: 496 IGTFLGSNFFLAARCARISAAVICRFSLGGSVGDGLSRGFARRRGL 359
I +G F L C ++ C S G G G S RRRGL
Sbjct: 49 ITVVIGVFFVLVFVCVIVNQCCDCDSSAGAGAGQGQSSAARRRRGL 94
>01_06_1315 +
36226262-36226533,36227946-36228060,36228710-36228752,
36229953-36230329,36230330-36230481,36230591-36230838,
36230919-36231047,36231130-36231739,36231842-36232086,
36232195-36232325
Length = 773
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -3
Query: 356 PAPARPNRASGPPEPVLSPAARRHQVAP 273
PAP P+ AS PP P SP R P
Sbjct: 203 PAPPPPHAASSPPLPSSSPCRRSPPALP 230
>01_06_0141 - 26905855-26906928
Length = 357
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +1
Query: 295 AAGDSTGSGGP--DARFGRAGAGKDPSA*RTPGTVRRR 402
AA + TG GG D G GAG+ +A RT G RRR
Sbjct: 18 AAAEVTGRGGARGDVGGGGGGAGEAAAAVRTGGERRRR 55
>10_08_0187 + 15592130-15592512,15592597-15592972
Length = 252
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +3
Query: 348 RCRKR-PLRLANPRDSPSPTEPP 413
R RKR P+R A+P PSP PP
Sbjct: 2 RIRKRTPVRAASPSPGPSPPPPP 24
>09_06_0096 - 20840855-20841994
Length = 379
Score = 28.3 bits (60), Expect = 4.8
Identities = 18/33 (54%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +1
Query: 313 GSGGPDARFGRAGAGKDPSA*RTPGTV--RRRP 405
GSGG AR G AGA D R P V RRRP
Sbjct: 281 GSGGDLARAGDAGASADVGPRRDPVPVVRRRRP 313
>08_02_0329 - 15833124-15833825
Length = 233
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 356 PAPARPNRASGPPEPVLSPAARRHQVAP 273
P P P A+GPP P +P ARR + +P
Sbjct: 191 PLPPLPVLAAGPPPP--TPPARRRRASP 216
>04_04_0198 +
23502657-23502900,23505228-23505298,23505690-23505727,
23505905-23507693
Length = 713
Score = 28.3 bits (60), Expect = 4.8
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -3
Query: 356 PAPARPNRASGPPEPVLSPAARRHQVAP*CELPLLVGLA-GDTMTVHFEDA 207
P P P P P L+PA ++HQ C + G A G M HF +A
Sbjct: 550 PPPPPPPPPPPAPAPALAPAPQQHQCLR-CPMVFPTGQALGGHMRKHFLEA 599
>01_06_0945 + 33217310-33217427,33218820-33219433
Length = 243
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -3
Query: 353 APARPNRASGPPEPVLSPAARRHQVAP*CELPLLVGLAG 237
+P P R PP L PAA +H+ LP L G G
Sbjct: 58 SPGTPPRGRRPPPSNLRPAAAQHRSPASPRLPTLPGRRG 96
>08_01_0415 +
3687998-3688096,3688326-3688520,3689219-3689385,
3689459-3689509,3689576-3689657,3689764-3689832,
3689939-3690109
Length = 277
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +3
Query: 147 VIGKVDDGSPAETAGLKRGDRIL 215
VI VD G A AGLK GD++L
Sbjct: 96 VITAVDSGGNAARAGLKSGDQVL 118
>01_01_0560 +
4117203-4117458,4119359-4119609,4119691-4119860,
4120188-4120385,4120922-4121081
Length = 344
Score = 27.9 bits (59), Expect = 6.3
Identities = 21/46 (45%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = -1
Query: 463 AARCARISAAVICRFSLGGSVGDGL--SRGFARRRGLFRHRHVQIG 332
AAR A SAA S GG VG L SRG A F R +IG
Sbjct: 25 AARYASSSAAAAPSSSSGGGVGGPLDVSRGAASAHSEFNRRASKIG 70
>11_01_0669 -
5454116-5454153,5454569-5454770,5454865-5455029,
5455278-5456183
Length = 436
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 212 PRSERS*YRRRDPQEVVARIKERPDDAELLVIAPAP 319
PR R+ RR P+EV R+ PD+A V++ P
Sbjct: 3 PRIRRAPARRAAPEEVPDRVSALPDEALHAVLSLLP 38
>04_03_0905 -
20722090-20722207,20722314-20722395,20722698-20722851,
20723026-20723089,20724282-20724404,20725326-20725452,
20725541-20726171
Length = 432
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 295 AAGDSTGSGGPDARFGRAGAGKDPSA*RTPGTVRR 399
AAG+ T + AR + AG + +A R PG V R
Sbjct: 48 AAGNGTAAAAAVARREQGAAGDEAAARREPGVVTR 82
>01_06_1083 -
34403769-34403774,34403819-34403918,34404235-34404318,
34404427-34404506,34404614-34404707,34404796-34404887,
34405335-34405425,34405617-34405719,34405919-34406008,
34406154-34406235,34406434-34406481,34406601-34406897,
34406992-34407078,34408047-34408247,34408329-34408533,
34409362-34410152
Length = 816
Score = 27.5 bits (58), Expect = 8.3
Identities = 20/56 (35%), Positives = 25/56 (44%)
Frame = -3
Query: 443 LGRGHLQVQLRRFGRRRTVPGVR*AEGSFPAPARPNRASGPPEPVLSPAARRHQVA 276
L G L + L RRR V + A P P P S PPEP SP+ ++A
Sbjct: 11 LALGPLPLPLPAARRRRRVRVLAVAADHTPPP--PPSPSSPPEPANSPSRLLRELA 64
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,474,010
Number of Sequences: 37544
Number of extensions: 434917
Number of successful extensions: 1972
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1968
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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