Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00153
         (586 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g46390.2 68418.m05710 peptidase S41 family protein similar to...    34   0.061
At5g46390.1 68418.m05709 peptidase S41 family protein similar to...    34   0.061
At3g57680.1 68416.m06426 peptidase S41 family protein similar to...    31   0.43 
At4g30940.1 68417.m04393 potassium channel tetramerisation domai...    31   0.75 
At2g35350.1 68415.m04334 protein phosphatase 2C family protein /...    31   0.75 
At3g11680.1 68416.m01432 expressed protein contains Pfam profile...    30   1.3  
At2g24240.1 68415.m02895 potassium channel tetramerisation domai...    29   3.0  
At1g11070.1 68414.m01268 hydroxyproline-rich glycoprotein family...    29   3.0  
At4g35610.1 68417.m05058 zinc finger (C2H2 type) family protein ...    28   5.3  
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex...    28   5.3  

>At5g46390.2 68418.m05710 peptidase S41 family protein similar to
           C-terminal peptidase of the D1 protein [Hordeum vulgare
           subsp vulgare] GI:1296805; contains Pfam profiles
           PF03572: Peptidase family S41B, PF00595: PDZ domain
           (Also known as DHR or GLGF)
          Length = 489

 Score = 34.3 bits (75), Expect = 0.061
 Identities = 17/34 (50%), Positives = 25/34 (73%)
 Frame = +3

Query: 147 VIGKVDDGSPAETAGLKRGDRILEVNGHSIAGET 248
           V+G V D S A+ AG+K+GD IL VNG  ++G++
Sbjct: 218 VLGLVLD-SAADIAGVKQGDEILAVNGMDVSGKS 250


>At5g46390.1 68418.m05709 peptidase S41 family protein similar to
           C-terminal peptidase of the D1 protein [Hordeum vulgare
           subsp vulgare] GI:1296805; contains Pfam profiles
           PF03572: Peptidase family S41B, PF00595: PDZ domain
           (Also known as DHR or GLGF)
          Length = 428

 Score = 34.3 bits (75), Expect = 0.061
 Identities = 17/34 (50%), Positives = 25/34 (73%)
 Frame = +3

Query: 147 VIGKVDDGSPAETAGLKRGDRILEVNGHSIAGET 248
           V+G V D S A+ AG+K+GD IL VNG  ++G++
Sbjct: 218 VLGLVLD-SAADIAGVKQGDEILAVNGMDVSGKS 250


>At3g57680.1 68416.m06426 peptidase S41 family protein similar to
           PSII D1 protein processing enzyme (GI::7268527)
           [Arabidopsis thaliana]; similar to SP|Q55669
           Carboxyl-terminal processing protease precursor
           (Photosystem II D1 protein processing peptidase) (EC
           3.4.21.102) [strain PCC 6803] {Synechocystis sp.};
           contains Pfam profile PF03572: Peptidase family S41B
          Length = 516

 Score = 31.5 bits (68), Expect = 0.43
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +3

Query: 165 DGSPAETAGLKRGDRILEVNGHSI 236
           +GSPA+ AG+  G+ ++E+NG  +
Sbjct: 217 EGSPADRAGIHEGEELVEINGEKL 240


>At4g30940.1 68417.m04393 potassium channel tetramerisation
           domain-containing protein contains Pfam profile PF02214:
           K+ channel tetramerisation domain
          Length = 441

 Score = 30.7 bits (66), Expect = 0.75
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 499 SIGTFLGSNFFLAARCARISAAVICRFSLGG 407
           SI  F GS++ L +R  R     IC FS+GG
Sbjct: 387 SISVFCGSDWVLTSRLKRSYGGSICDFSIGG 417


>At2g35350.1 68415.m04334 protein phosphatase 2C family protein /
           PP2C family protein similar to protein phosphatase-2c
           (GI:3608412) [Mesembryanthemum crystallinum]; contains
           Pfam PF00481 : Protein phosphatase 2C domain
          Length = 783

 Score = 30.7 bits (66), Expect = 0.75
 Identities = 21/72 (29%), Positives = 34/72 (47%)
 Frame = -3

Query: 218 FEDAVAAF*TSGLCRRAIVNLTDY*PGFPFSACKLNP*PSKSGVFRTWQSRGSMAADPFA 39
           ++DA  +    G+ RR++VN   +     FSA  L P P +SG+F +        + P  
Sbjct: 124 YDDATESSFGGGV-RRSVVNANGFEGTSSFSALPLQPGPDRSGLFMSGPIERGATSGPLD 182

Query: 38  DMSVVGVRANSA 3
             +    R+NSA
Sbjct: 183 PPAGEISRSNSA 194


>At3g11680.1 68416.m01432 expressed protein contains Pfam profile
           PF01027: Uncharacterized protein family UPF0005
          Length = 488

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -1

Query: 475 NFFLAARCARISAAVICRFSLGGSVGDGLSRGFA 374
           +F +    A ++  V+  F++GG++  GL+RGFA
Sbjct: 70  SFGVTGMWAILTVVVVFEFTVGGTLSKGLNRGFA 103


>At2g24240.1 68415.m02895 potassium channel tetramerisation
           domain-containing protein contains Pfam profile PF02214:
           K+ channel tetramerisation domain
          Length = 441

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 499 SIGTFLGSNFFLAARCARISAAVICRFSLGG 407
           SI  F G ++ L +R  R     IC FS+GG
Sbjct: 387 SISVFCGPDWVLTSRLRRSYGGSICDFSIGG 417


>At1g11070.1 68414.m01268 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 554

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -3

Query: 368 EGSFPAPARPNRASGPPEPVLSPAARRHQVAP 273
           E   P P  P RA+ PP P L  A R+   AP
Sbjct: 218 ESYAPLPPPPGRAALPPPPPLPMAVRKGVAAP 249


>At4g35610.1 68417.m05058 zinc finger (C2H2 type) family protein
           contains Pfam domain PF00096: Zinc finger, C2H2 type
          Length = 271

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +1

Query: 250 TRSGSSHQGAT**RRAAGDSTGSGGPDARFGRAGAG 357
           T  G S  G     R++GD +GSGG DA     G G
Sbjct: 194 TVGGGSSGGVAVGGRSSGDFSGSGGGDAPGSEGGRG 229


>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
           extensin family protein contains similarity to disease
           resistance protein GI:3894383 from [Lycopersicon
           esculentum]; contains leucine-rich repeats,
           Pfam:PF00560; contains proline rich extensin domains,
           INTERPRO:IPR002965
          Length = 847

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = -3

Query: 398 RRTVPGVR*AEGSFPAPARPNRASGPPEPVLSPAARRHQVAP 273
           RR+ P  +  +   P P  P  +  PP P+ SP    H   P
Sbjct: 520 RRSPPPPKVEDTRVPPPQPPMPSPSPPSPIYSPPPPVHSPPP 561


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,788,377
Number of Sequences: 28952
Number of extensions: 282741
Number of successful extensions: 1062
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)