Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00152
         (787 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    28   0.074
AY563109-1|AAS99587.1|   46|Tribolium castaneum aristaless protein.    22   6.4  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 28.3 bits (60), Expect = 0.074
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +3

Query: 510 YLF**NRLSRND*KA*ALRTHRNESLFSNDNTNK*KMLTKNLQSHINILNISGQ 671
           +LF   R +R+D     LRTH  E  F+    NK  M + +L  H+   N +G+
Sbjct: 349 WLFCGKRFTRSDELQRHLRTHTGEKRFACPICNKRFMRSDHLAKHVKTHNGNGK 402


>AY563109-1|AAS99587.1|   46|Tribolium castaneum aristaless protein.
          Length = 46

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 105 KNLMDVFSRLGYPSASSHEELRSK 176
           + L   FSR  YP   + EEL  K
Sbjct: 10  EELEKAFSRTHYPDVFTREELAMK 33


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,849
Number of Sequences: 336
Number of extensions: 3316
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21272645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)