Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00152
         (787 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81084-2|CAB03107.1|  276|Caenorhabditis elegans Hypothetical pr...    30   2.2  
AC024882-17|AAF60937.1|  321|Caenorhabditis elegans Serpentine r...    28   8.7  

>Z81084-2|CAB03107.1|  276|Caenorhabditis elegans Hypothetical
           protein F46A9.2 protein.
          Length = 276

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
 Frame = +3

Query: 129 RLGYPSASSHEELRSKNYFRYLNRVNLIEVQLLMLIPNKMNLNYKDKC--RVLSGILLKL 302
           +L  PSA SH+E  + N+F  +  +NL        IPN  ++ Y  KC  ++   +++++
Sbjct: 31  KLEDPSAPSHDEQWTYNFF--ITPLNLNISPTDFKIPNDKSVKYTVKCEAKIKQDLIVQV 88

Query: 303 NSL 311
           +SL
Sbjct: 89  HSL 91


>AC024882-17|AAF60937.1|  321|Caenorhabditis elegans Serpentine
           receptor, class z protein28 protein.
          Length = 321

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 23/102 (22%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
 Frame = -3

Query: 785 LRIVYAKFVHKAVRYMYIIKICLTVTHL*DNSKLEDYCLSAYI*NVNV*LEIFS*HFLFI 606
           +  VY  FV K +  + +  +   +    +   ++ + LS +I  +N  L + S  ++ I
Sbjct: 144 INYVYTVFVSKEILTIGLYAVNWFIDVSVEKMSMKLFYLSTFI-FLNCMLIVTSCLYIPI 202

Query: 605 RVVVRKKRFI--SVRPQRLRLLVVSTQ-SILLKQIFVFILLF 489
            + VRK  ++  +++    + +++ T+ ++L+K  ++FILLF
Sbjct: 203 MISVRKFSYLPCALKNSPEKYILLQTKVTLLMKSTYIFILLF 244


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,375,609
Number of Sequences: 27780
Number of extensions: 293964
Number of successful extensions: 589
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)