Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00151
         (414 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   1.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   1.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   1.8  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    22   3.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   5.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    20   9.6  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = +3

Query: 216 HGASHRRRSQEPGALNPNXTVFDAKRLIGRKFDDPKIQQGMKHWPFKVINECGKPKI 386
           H   +  R  E  AL+   ++F    L+G    DP I + +K     +   C KP++
Sbjct: 174 HDPEYSARENELRALS---SLFSKGCLVGTWSPDPAINRRLKETYSNMCALCEKPEV 227


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = +3

Query: 216 HGASHRRRSQEPGALNPNXTVFDAKRLIGRKFDDPKIQQGMKHWPFKVINECGKPKI 386
           H   +  R  E  AL+   ++F    L+G    DP I + +K     +   C KP++
Sbjct: 174 HDPEYSARENELRALS---SLFSKGCLVGTWSPDPAINRRLKETYSNMCALCEKPEV 227


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = +3

Query: 216 HGASHRRRSQEPGALNPNXTVFDAKRLIGRKFDDPKIQQGMKHWPFKVINECGKPKI 386
           H   +  R  E  AL+   ++F    L+G    DP I + +K     +   C KP++
Sbjct: 174 HDPEYSARENELRALS---SLFSKGCLVGTWSPDPAINRRLKETYSNMCALCEKPEV 227


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +3

Query: 273 TVFDAKRLIGRKFDDPKIQQGMKHWPFKVINECGKPKIQIEFKGE 407
           T+F  + +  R  + P + Q  K  PF+ +   GK   + EF+G+
Sbjct: 281 TIFGYQDMRNRGNNFP-VYQVEKRSPFRYLGARGKKNPRWEFRGK 324


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 8/21 (38%), Positives = 9/21 (42%)
 Frame = +3

Query: 318  PKIQQGMKHWPFKVINECGKP 380
            P   +GM H PF   N    P
Sbjct: 1147 PSFMEGMPHLPFTPFNFWNPP 1167


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 5/13 (38%), Positives = 8/13 (61%)
 Frame = +3

Query: 315 DPKIQQGMKHWPF 353
           DP + +  +HW F
Sbjct: 855 DPAVYEDWRHWKF 867


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,305
Number of Sequences: 438
Number of extensions: 2738
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)