Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00150
         (747 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         23   2.0  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    23   2.6  
EF532798-1|ABQ08060.1|   50|Tribolium castaneum acetylcholineste...    23   3.4  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    22   4.5  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   6.0  

>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +1

Query: 331 QAADESERIRKALENRTNMEDDRVAILEAQLSQA 432
           QA   +  +++A+  + +  D+R+A ++AQL  A
Sbjct: 54  QAPKLNAEVKRAITQQHSERDERLAHVQAQLGAA 87


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 412 PRWQRDHPPCWCGSPAPCVFARIHRR 335
           PR ++ HPP W      C+  R  RR
Sbjct: 46  PRQKKSHPPQWTWQ---CINQRCERR 68


>EF532798-1|ABQ08060.1|   50|Tribolium castaneum
           acetylcholinesterase protein.
          Length = 50

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +2

Query: 644 LILNYWTPNSKRLKHVPSSP 703
           L LN W P   R++H    P
Sbjct: 14  LYLNIWVPQRLRIRHHGDKP 33


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 451 DSSAMSSPVTVEPPRWQRDHPPCWCGSP 368
           +++ + SP  V  P   RD  PC  G P
Sbjct: 109 NNNPLPSPRRVAVPVLVRDGKPCLSGGP 136


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 84  VVILIHFCVKIECLNANKQRHL 19
           V I + +C+K EC+   K+R +
Sbjct: 55  VPIGVLYCMKCECVPLQKKRRI 76


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,946
Number of Sequences: 336
Number of extensions: 2584
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19923648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)