Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00150
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    32   0.076
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch...    30   0.30 
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    29   0.53 
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo...    27   2.1  
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc...    27   2.8  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    27   3.8  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    26   5.0  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   5.0  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    26   6.6  
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo...    26   6.6  
SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|...    25   8.7  
SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |...    25   8.7  

>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 32.3 bits (70), Expect = 0.076
 Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
 Frame = +1

Query: 310  AKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQANSSPRSRTRNTKRWRATCS 489
            ++L E S+  D SE+     EN  N   +R+A LE+ LS    +  ++ R  ++ R   S
Sbjct: 930  SRLFEISKQLDNSEQ-----EN--NKFRERIAELESHLSNYAEAKLAQERELEQTRVLIS 982

Query: 490  YGAGPRGAEERAEQSDCKIVELEEELRVVGN-NLKSLEVS 606
              +     +E  E+ +  ++ +EEE+R V + N + L V+
Sbjct: 983  DQSQDGELKELLEEKENALIMMEEEMRQVNDANTELLRVN 1022


>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 161

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 30/147 (20%), Positives = 55/147 (37%)
 Frame = +1

Query: 304 ATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQANSSPRSRTRNTKRWRAT 483
           A A+  EA   A+ +E   K +E + ++++     L  +   A S        TK+ R  
Sbjct: 11  ARAETDEAVARAEAAEAKLKEVELQLSLKEQEYESLSRKSEAAESQLEELEEETKQLRLK 70

Query: 484 CSYGAGPRGAEERAEQSDCKIVELEEELRVVGNNLKSLEVSEEKATKREETYETHLKLLD 663
                     +  AEQ   K+  LEEEL      L+       +   + E +E  ++ L+
Sbjct: 71  AD---NEDIQKTEAEQLSRKVELLEEELETNDKLLRETTEKMRQTDVKAEHFERRVQSLE 127

Query: 664 AQLKXXXXXXXXXXXSVQKLQKEVDRL 744
            +                K++ E+D +
Sbjct: 128 RERDDMEQKLEEMTDKYTKVKAELDEV 154


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 4/123 (3%)
 Frame = +1

Query: 307 TAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQ--LSQANSSPRSRTRNTKRWRA 480
           TA L E     D  E  ++ L+N++    +  AIL  +  L +  S P+ +  ++   + 
Sbjct: 261 TASLEEYLNDPDFEENRKQYLQNKSGSPVEETAILNRKPTLRKKKSIPKKQNESSSTIQK 320

Query: 481 TCSYGAGPRGAEERAEQSDCKIVELEEELRVVGNNLKSLEVSEEKATKREE--TYETHLK 654
             +       +EE A +S  +       +      +K  E+  E+  + EE   YE+  +
Sbjct: 321 ENTVQQEASSSEEEAVKSLPETQRTTSRIETQEEEIKEEEMEGEEEEEEEEVPNYESENE 380

Query: 655 LLD 663
           L D
Sbjct: 381 LED 383


>SPBC947.07 |||ribosome biogenesis protein
           Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 233

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 35/154 (22%), Positives = 61/154 (39%), Gaps = 11/154 (7%)
 Frame = +1

Query: 304 ATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQ---ANSSPRSRTRNTKRW 474
           AT K+  A       E+ +   E +   + +  A  E++++     NSS           
Sbjct: 27  ATEKVDRALLLQRRKEKAKARAEAKKLAKKESKAKQESKVAAYDTGNSSDNIADEENDNH 86

Query: 475 RATCSYGAGPRGAEERAEQSDCKIVELEEELRVVGNNLKSLE--------VSEEKATKRE 630
           ++T +YG    G +++      K+   +     V   LK LE        + EEK  K E
Sbjct: 87  KSTITYGTLIVG-DDKFSNGKLKVAGKKRGPTDVFGALKHLEAKKRRIESMDEEKRRKIE 145

Query: 631 ETYETHLKLLDAQLKXXXXXXXXXXXSVQKLQKE 732
           E+ + H  LL A+ K           S+++ +KE
Sbjct: 146 ESDKWHRVLLQAEGKKLKDNEQLLKKSIRRKEKE 179


>SPBC16A3.08c |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +1

Query: 316 LSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQANSSPRSRTRNTK 468
           LSE   AA    R  + LEN T +E      L A L ++ S  +S  + +K
Sbjct: 181 LSERKSAAKPVGRTVEKLENATKVEKSAPEELFASLKKSASQKKSAAKESK 231


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -2

Query: 194 ATVCGTPRTRPYIFPFPLSFDAFSSSKRLKSFLAACLS 81
           A+V GTP  RP  F FP      S  K+     A  +S
Sbjct: 771 ASVDGTPMVRPLFFEFPKQISLASVDKQFMIGTALLIS 808


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 32/148 (21%), Positives = 59/148 (39%), Gaps = 11/148 (7%)
 Frame = +1

Query: 337 ADESERIRKALENRTNMEDDRVAIL-----EAQL-SQANSSPRS---RTRNTKRWRATC- 486
           A++  R++  L  +  +ED + ++L     E +L  + N   R+    TRN K       
Sbjct: 320 AEKESRLKLVLSEKAKLEDSKNSVLSFLKDENELFMKQNQLYRTILYETRNKKTLVQNLL 379

Query: 487 -SYGAGPRGAEERAEQSDCKIVELEEELRVVGNNLKSLEVSEEKATKREETYETHLKLLD 663
            S     +   E+ EQ++  I E  EE++ +      ++       K  ++YE     ++
Sbjct: 380 NSLEGKLQAHLEKFEQTERDISEKNEEVKSLREKAAKVKNDCTSEKKTRQSYEQQTVKIE 439

Query: 664 AQLKXXXXXXXXXXXSVQKLQKEVDRLE 747
            QLK           S++ L  E    E
Sbjct: 440 EQLKFLLNKEKKLKKSIEALSFEKSEAE 467


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = +1

Query: 553  LEEELRVVGNNLKSLEVSEEKATKREETYETHLKL--LDAQLKXXXXXXXXXXXSVQKLQ 726
            LE+E   + + LKSLE   EK     E  E H++L  L  +LK            +   Q
Sbjct: 897  LEQESAQLNSGLKSLEA--EKQLLHTENEELHIRLDKLTGKLKIEESKSSDLGKKLTARQ 954

Query: 727  KEVDRLE 747
            +E+  L+
Sbjct: 955  EEISNLK 961


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -3

Query: 451 DSSAMSSPVTVEPPRWQRDHPPCWCGSPAPCVFARIHRRPG 329
           D+    SP +  PP + + HPP    + AP +  R+   PG
Sbjct: 140 DTVISDSPTSPHPPSFVQPHPPYGIFA-APILDVRVLTNPG 179


>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
           Tip1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 592 SLEVSEEKATKREETYETHLKLLDAQLK 675
           ++E  EE + +  ETYE  +  L+AQL+
Sbjct: 211 TIECLEESSNRAIETYENRIAELEAQLE 238


>SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +1

Query: 433 NSSPRSRTRNTKRWRATCSYGAGPRGAEERAEQSDCKIVELEEEL 567
           +S P+ + R  +  +    YG GPR  + R +    K+  + +EL
Sbjct: 34  SSQPKPQERPFQMKKPRAPYGMGPRAMKRREKAEKEKLGVVNDEL 78


>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 526 EQSDCKIVELEEELRVVGNNLKSLEVSEEKATKREETYETHL-KLLDAQ 669
           + ++ + V  E+  R  G N   L    ++  K+++ YE H+ KLLD +
Sbjct: 228 DAAEIEEVSAEKARRQFGKNGIRLSQDAQEEEKQKKKYEQHIKKLLDGE 276


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,406,664
Number of Sequences: 5004
Number of extensions: 41141
Number of successful extensions: 163
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)