Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00150
         (747 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    27   0.81 
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    24   5.7  

>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
           topoisomerase protein.
          Length = 1039

 Score = 26.6 bits (56), Expect = 0.81
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
 Frame = +3

Query: 357 TQGAGEPHQHGG*SRCHL----GGSTVTGELIAEESDKKYEEVARNL 485
           T G GE    GG + C      GG T TG  +   S+K Y  V + L
Sbjct: 181 TNGGGELTTGGGTNGCTKAGGGGGGTGTGGGLVSSSEKNYNPVRKKL 227


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 23.8 bits (49), Expect = 5.7
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +1

Query: 520 RAEQSDCKIVELEEELRV-VGNNLKSLEVSEEKATKREETYETHLK 654
           R ++SD   ++ E   +  +  N K +E  + +A KR+E    H+K
Sbjct: 408 REQKSDQDRLDSEINKKAQIEENYKKIESEKNEALKRQEKLIDHIK 453


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 625,510
Number of Sequences: 2352
Number of extensions: 11688
Number of successful extensions: 28
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 76923555
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)