Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00149
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    28   1.3  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    27   1.7  
SPBC887.01 |||acireductone dioxygenase family|Schizosaccharomyce...    27   2.3  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   2.3  
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb...    27   3.0  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   5.3  
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc...    25   7.0  

>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 9/24 (37%), Positives = 20/24 (83%)
 Frame = +3

Query: 270 NKSVLKTLIKHTAHIFIRLNSDTN 341
           NK++  T+IK T ++++++NS+T+
Sbjct: 541 NKTIDGTIIKSTTNVYLKVNSETS 564


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = -1

Query: 338 CIRIKSYENMSSVLNESF*YAFISFRRMMFVTKSLNMI--LTPFKTSGLTRNLVYLLRID 165
           C+++K  + +S+ L         + R++  +  S N I  L P   SGL+RN +  L I 
Sbjct: 452 CVKLKRLD-ISNNLRSPRGKPITALRQLEVLNMSRNDIYELDPLIFSGLSRNSLKELNIA 510

Query: 164 NNSIF 150
           NN +F
Sbjct: 511 NNKLF 515


>SPBC887.01 |||acireductone dioxygenase family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 178

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
 Frame = -2

Query: 436 PCCYHRNTHTT*ERVHA---DHKNRGWIQYVHKASFVSELSRMK 314
           P  YHR T TT + +HA    H+N  WI      S   EL   K
Sbjct: 123 PGIYHRFTTTTDDYIHAMRLFHENPKWIALSRTDSTSEELDARK 166


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +2

Query: 329 FGYKRCFMYVLNPATVFVVCVYSFLSRMCVPMVATRAN 442
           FGY  C     NP T+F  C     S+ C P+  TRA+
Sbjct: 405 FGYYSCN----NPCTLFFDCGLHKCSKTCHPISETRAH 438


>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = +2

Query: 347 FMYVLNPATVFVVCVYSFLSRM-CVPMVATRANLSWGLNEIETTNKISPVKVYLATAVGR 523
           F+++      F+ C +  ++ + C   +  R ++ WG+  +     +     Y   A GR
Sbjct: 153 FLFLKKKPLAFLHCYHHGITALLCFTQLLGRTSVQWGVIGLNLYVHVIMYSYYFLAACGR 212

Query: 524 RV 529
           RV
Sbjct: 213 RV 214


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 258  TSEANKSVLKTLIKHTAHIFIRLNSDTNDALCTY 359
            TS    S+++ + K T H F+R+N+  +  L  Y
Sbjct: 903  TSSGKTSMIEYVAKKTGHKFVRINNHEHTDLQEY 936


>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 442

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 231 VQRFRYKHHTSEANKSVLKTLIKH 302
           + ++RYK  T +  K+ LK ++KH
Sbjct: 104 LSKYRYKADTEQIKKAHLKKVLKH 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,125,052
Number of Sequences: 5004
Number of extensions: 41208
Number of successful extensions: 104
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)