Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00149
         (641 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0437 - 20765682-20765951,20766040-20766294,20766374-207665...    32   0.34 
10_08_0332 - 16843295-16843356,16843884-16846656                       29   2.4  
10_08_0331 - 16831646-16834756                                         29   2.4  
04_04_0491 - 25605560-25605684,25605826-25605928,25606026-256075...    29   2.4  
08_01_0680 - 5958066-5960253,5960707-5961503                           29   4.1  
07_03_0225 - 15390364-15390924,15391231-15391288,15392160-153922...    27   9.6  
01_06_0943 + 33204112-33204136,33204703-33205743,33205786-332059...    27   9.6  

>06_03_0437 - 20765682-20765951,20766040-20766294,20766374-20766545,
            20766964-20767097,20767205-20767288,20767369-20767659,
            20767867-20768214,20768321-20768496,20768579-20768695,
            20768780-20768936,20769110-20769225,20769323-20769483,
            20769567-20769883,20769969-20770250,20770347-20770648,
            20771977-20772067,20773203-20773256,20773723-20773812
          Length = 1138

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 308  SYFHTT*FGYKRCFMYVLNPATVFVVCVYSFLSRMCV 418
            SY+ T  FGY R FM V+ P  V     ++F+  +C+
Sbjct: 1094 SYYVTHHFGYHRKFMPVVAPVLVLFAVFFAFMYAICI 1130


>10_08_0332 - 16843295-16843356,16843884-16846656
          Length = 944

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 151 NIELLSILNKYTKFRVNPDVLKGVKIMFKDFVTN 252
           N++ LS+ N Y    + PD+ KG+ +    F  N
Sbjct: 509 NLQYLSVFNNYMSGTIPPDLGKGIALQHVSFTNN 542


>10_08_0331 - 16831646-16834756
          Length = 1036

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 151 NIELLSILNKYTKFRVNPDVLKGVKIMFKDFVTN 252
           N++ LS+ N Y    + PD+ KG+ +    F  N
Sbjct: 510 NLQYLSVFNNYMSGTIPPDLGKGIALQHVSFTNN 543


>04_04_0491 -
           25605560-25605684,25605826-25605928,25606026-25607592,
           25608694-25610198
          Length = 1099

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = +1

Query: 322 DLIRIQTMLYVRIESSHGFCGLRVLV----LKSYVCSDG-SNTGKSKLGTE 459
           +L  +QTM  ++  S  G CG+  LV    L+  +C  G  N  K ++ TE
Sbjct: 707 ELTNLQTMHTIKFTSDSGSCGIADLVNLDNLRGELCISGIENVSKEQIATE 757


>08_01_0680 - 5958066-5960253,5960707-5961503
          Length = 994

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -3

Query: 471 VSISFSPQL-RFARVATIGTHIRLKNEYTQTTKTVAGFNTYIKHRLY 334
           VS+S  P + RF +       IRL +EY +    +     Y++HR Y
Sbjct: 221 VSVSQRPDVTRFLKGIQSKLPIRLSSEYCEVKDIIDNIRAYLQHRRY 267


>07_03_0225 -
           15390364-15390924,15391231-15391288,15392160-15392238,
           15392354-15393167
          Length = 503

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 593 CEMLL*PNNLSPLDMIFTRREKRACPPQWPSKLSQ 489
           C  L   NNL+ L  ++   E   C P W S+L++
Sbjct: 395 CPALQFVNNLNALKWLYLEDETMDCIPMWLSRLAE 429


>01_06_0943 +
           33204112-33204136,33204703-33205743,33205786-33205926,
           33206205-33206245,33208250-33208346,33208599-33208836,
           33208937-33209087,33209155-33209454
          Length = 677

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 303 TAHIFIRLNSDTNDALCTY*IQP 371
           T  IF + N+ TND  CTY   P
Sbjct: 219 TIPIFFKCNNSTNDITCTYSANP 241


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,614,808
Number of Sequences: 37544
Number of extensions: 231173
Number of successful extensions: 455
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)