Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00149
         (641 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11397| Best HMM Match : ECSIT (HMM E-Value=1.7e-24)                 28   7.4  
SB_536| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   7.4  
SB_53905| Best HMM Match : 7tm_1 (HMM E-Value=7.4e-05)                 27   9.8  

>SB_11397| Best HMM Match : ECSIT (HMM E-Value=1.7e-24)
          Length = 316

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 267 LQTYDVCNEIFEHDFDPLQNV 205
           ++TYD+C EIF     P+Q V
Sbjct: 219 IETYDICEEIFGKASQPVQKV 239


>SB_536| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 9/36 (25%), Positives = 21/36 (58%)
 Frame = +2

Query: 398 FLSRMCVPMVATRANLSWGLNEIETTNKISPVKVYL 505
           +  ++C+P +  +  + +G+NE E+T  +   K Y+
Sbjct: 3   YFCQICIPWIPKQRAIDFGINEFESTCFLPNTKYYV 38


>SB_53905| Best HMM Match : 7tm_1 (HMM E-Value=7.4e-05)
          Length = 314

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +2

Query: 443 LSWGLNEIETTNKISPVKVYL 505
           LSWG+ ++ T N +S VK+++
Sbjct: 203 LSWGIPDVATMNLLSTVKIWI 223


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,260,594
Number of Sequences: 59808
Number of extensions: 292980
Number of successful extensions: 638
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)