Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00149
         (641 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g33430.1 68414.m04138 galactosyltransferase family protein co...    29   2.6  
At5g36820.1 68418.m04411 F-box family protein contains Pfam PF00...    28   4.6  
At5g36730.1 68418.m04395 F-box family protein contains Pfam PF00...    28   4.6  
At5g20140.1 68418.m02397 SOUL heme-binding family protein contai...    27   8.0  
At3g01060.2 68416.m00007 expressed protein                             27   8.0  
At3g01060.1 68416.m00008 expressed protein                             27   8.0  

>At1g33430.1 68414.m04138 galactosyltransferase family protein
           contains Pfam profile: PF01762 galactosyltransferase
          Length = 395

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +1

Query: 250 NIIRLKLIKAY*KLSLSTLLIFSYDLIRIQTMLYVRIESS-HGFCGLRVLVLKSY 411
           + +RLK I+ Y +LS  T L FS          YV+++   H   G+ V  L  Y
Sbjct: 192 DFLRLKHIEGYHQLSTKTRLYFSTATAMYDAEFYVKVDDDVHVNLGMLVTTLARY 246


>At5g36820.1 68418.m04411 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain
          Length = 410

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -1

Query: 314 NMSSVLNESF*YAFISFRRMMFVTKSLNMILTPFKTSGLTRNLVYLLRID 165
           NMS +    F  +F SF    F+ +  N+++ P K     RNL Y++  D
Sbjct: 309 NMSPLTGFQFNRSFGSF----FIVEEKNVVVVPIKGGHFKRNLAYIIGKD 354


>At5g36730.1 68418.m04395 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain
          Length = 410

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -1

Query: 314 NMSSVLNESF*YAFISFRRMMFVTKSLNMILTPFKTSGLTRNLVYLLRID 165
           NMS +    F  +F SF    F+ +  N+++ P K     RNL Y++  D
Sbjct: 309 NMSPLTGFQFNRSFGSF----FIVEEKNVVVVPIKGGHFKRNLAYIIGKD 354


>At5g20140.1 68418.m02397 SOUL heme-binding family protein contains
           PFam profile PF04832: SOUL heme-binding protein
          Length = 378

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -3

Query: 639 DIVTKI*TLDGFLVKLRNVALTK*SFTPRYDLYATRET 526
           D +TK  T+ G+L    N+A  K  FTP++ L+  ++T
Sbjct: 94  DPITKHDTISGYLF---NIAFLKNIFTPQFQLHWAKQT 128


>At3g01060.2 68416.m00007 expressed protein
          Length = 442

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 541 RDERNAPAHRSGQVNFHRRDFICCFNFIQ 455
           R +R  PAH    +N  R DF+  F F++
Sbjct: 355 RFKRIIPAHFEAPINAGRSDFLAAFGFLE 383


>At3g01060.1 68416.m00008 expressed protein
          Length = 455

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 541 RDERNAPAHRSGQVNFHRRDFICCFNFIQ 455
           R +R  PAH    +N  R DF+  F F++
Sbjct: 368 RFKRIIPAHFEAPINAGRSDFLAAFGFLE 396


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,683,841
Number of Sequences: 28952
Number of extensions: 201208
Number of successful extensions: 419
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)