Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00148
(795 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 157 1e-39
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 155 7e-39
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 135 8e-33
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 135 8e-33
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 130 2e-31
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 78 2e-15
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 71 1e-13
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 55 1e-08
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar... 29 0.58
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 27 4.1
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 27 4.1
SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 26 5.4
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 26 5.4
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ... 26 7.1
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy... 26 7.1
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 157 bits (382), Expect = 1e-39
Identities = 74/84 (88%), Positives = 79/84 (94%)
Frame = +3
Query: 510 TAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQAS 689
TAGDTHLGGEDFD+R+VNHF+QEFKRK KKD+ N RA+RRLRTACERAKRTLSSS QAS
Sbjct: 220 TAGDTHLGGEDFDSRLVNHFIQEFKRKNKKDITGNARAVRRLRTACERAKRTLSSSAQAS 279
Query: 690 IEIDSLFEGIDFYTSITRARFEEL 761
IEIDSLFEGIDFYTSITRARFEEL
Sbjct: 280 IEIDSLFEGIDFYTSITRARFEEL 303
Score = 147 bits (357), Expect = 1e-36
Identities = 70/83 (84%), Positives = 77/83 (92%)
Frame = +1
Query: 262 VQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIF 441
V +AV+TVPAYFNDSQRQATKDAG I+GLNVLRIINEPTAAAIAYGLD+ GE NVLIF
Sbjct: 137 VTDAVVTVPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAAAIAYGLDRSNQGESNVLIF 196
Query: 442 DLGGGTFDVSILTIEDGIFEVKS 510
DLGGGTFDVS+LTIE+GIFEVK+
Sbjct: 197 DLGGGTFDVSLLTIEEGIFEVKA 219
Score = 145 bits (352), Expect = 6e-36
Identities = 66/84 (78%), Positives = 75/84 (89%)
Frame = +2
Query: 2 GDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGED 181
GDAAKNQVAMNP+NTIFDAKRLIGRKF+D VQ+DMKHWPF+V+S GKP ++V YKGE
Sbjct: 50 GDAAKNQVAMNPHNTIFDAKRLIGRKFDDPEVQSDMKHWPFKVISKDGKPVLQVEYKGET 109
Query: 182 KTFFPEEVSSMVLTKMKETAEAYL 253
KTF PEE+SSMVL KM+ETAEAYL
Sbjct: 110 KTFTPEEISSMVLMKMRETAEAYL 133
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 155 bits (376), Expect = 7e-39
Identities = 73/84 (86%), Positives = 78/84 (92%)
Frame = +3
Query: 510 TAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQAS 689
TAGDTHLGGEDFD+R+VNHF QEFKRK KKD+ N RA+RRLRTACERAKRTLSSS QAS
Sbjct: 220 TAGDTHLGGEDFDSRLVNHFAQEFKRKNKKDITGNARAVRRLRTACERAKRTLSSSAQAS 279
Query: 690 IEIDSLFEGIDFYTSITRARFEEL 761
IEIDSL+EGIDFYTSITRARFEEL
Sbjct: 280 IEIDSLYEGIDFYTSITRARFEEL 303
Score = 144 bits (349), Expect = 1e-35
Identities = 69/83 (83%), Positives = 76/83 (91%)
Frame = +1
Query: 262 VQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIF 441
V +AV+TVPAYFNDSQRQATKDAG I+GLNVLRIINEPTAAAIAYGLD+ E NVLIF
Sbjct: 137 VTDAVVTVPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAAAIAYGLDRSNQHETNVLIF 196
Query: 442 DLGGGTFDVSILTIEDGIFEVKS 510
DLGGGTFDVS+LTIE+GIFEVK+
Sbjct: 197 DLGGGTFDVSLLTIEEGIFEVKA 219
Score = 138 bits (333), Expect = 1e-33
Identities = 62/84 (73%), Positives = 73/84 (86%)
Frame = +2
Query: 2 GDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGED 181
GDAAKNQVAMNP+NTIFDAKRLIGR+F D VQ+DMKHWPF+V+ GKP I+V +KGE
Sbjct: 50 GDAAKNQVAMNPHNTIFDAKRLIGRRFNDPEVQSDMKHWPFKVIEKDGKPLIQVEFKGET 109
Query: 182 KTFFPEEVSSMVLTKMKETAEAYL 253
KTF PEE+SSMVL KM+E+AEA+L
Sbjct: 110 KTFTPEEISSMVLLKMRESAEAFL 133
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 135 bits (326), Expect = 8e-33
Identities = 61/83 (73%), Positives = 78/83 (93%)
Frame = +1
Query: 256 KTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVL 435
K V +AV+TVPAYFND+QRQATKDAGTI+GLNV+RI+NEPTAAAIAYGLDK T E++++
Sbjct: 168 KPVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVIRIVNEPTAAAIAYGLDKTDT-EKHIV 226
Query: 436 IFDLGGGTFDVSILTIEDGIFEV 504
++DLGGGTFDVS+L+I++G+FEV
Sbjct: 227 VYDLGGGTFDVSLLSIDNGVFEV 249
Score = 111 bits (266), Expect = 1e-25
Identities = 49/86 (56%), Positives = 66/86 (76%)
Frame = +2
Query: 2 GDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGED 181
G+AAKNQ NP NTIFD KRLIGRKF++ T+ D+K +PF +V+D +P ++V G+
Sbjct: 83 GEAAKNQAPSNPENTIFDIKRLIGRKFDEKTMAKDIKSFPFHIVNDKNRPLVEVNVGGKK 142
Query: 182 KTFFPEEVSSMVLTKMKETAEAYLAK 259
K F PEE+S+M+L+KMK+TAEAYL K
Sbjct: 143 KKFTPEEISAMILSKMKQTAEAYLGK 168
Score = 94.3 bits (224), Expect = 2e-20
Identities = 41/84 (48%), Positives = 60/84 (71%)
Frame = +3
Query: 510 TAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQAS 689
T+GDTHLGGEDFDNR++N+ + + RK D+ + +A+ +L+ E+AKRTLSS
Sbjct: 252 TSGDTHLGGEDFDNRVINYLARTYNRKNNVDVTKDLKAMGKLKREVEKAKRTLSSQKSVR 311
Query: 690 IEIDSLFEGIDFYTSITRARFEEL 761
IEI+S F G DF +++RA+FEE+
Sbjct: 312 IEIESFFNGQDFSETLSRAKFEEI 335
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 135 bits (326), Expect = 8e-33
Identities = 65/83 (78%), Positives = 72/83 (86%)
Frame = +1
Query: 256 KTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVL 435
K V+ AVITVPAYF+DSQR ATKDAG I+GLNVLRIINEPTAAAIAYGLD K +NVL
Sbjct: 139 KRVEKAVITVPAYFSDSQRAATKDAGAIAGLNVLRIINEPTAAAIAYGLDAKSDKPKNVL 198
Query: 436 IFDLGGGTFDVSILTIEDGIFEV 504
IFDLGGGTFDVS+L I+ G+FEV
Sbjct: 199 IFDLGGGTFDVSLLKIQGGVFEV 221
Score = 132 bits (318), Expect = 7e-32
Identities = 60/84 (71%), Positives = 72/84 (85%)
Frame = +3
Query: 510 TAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQAS 689
TAGDTHLGGEDFDN +V HF+QEFKRK K D++ + RALRRLR+ACERAKR LSS TQ +
Sbjct: 224 TAGDTHLGGEDFDNALVEHFIQEFKRKQKIDISDDPRALRRLRSACERAKRALSSVTQTT 283
Query: 690 IEIDSLFEGIDFYTSITRARFEEL 761
+E+DSL GIDF +SITRARFE++
Sbjct: 284 VEVDSLSNGIDFSSSITRARFEDI 307
Score = 122 bits (293), Expect = 8e-29
Identities = 55/86 (63%), Positives = 67/86 (77%)
Frame = +2
Query: 2 GDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGED 181
GDAAKNQ AMNP NT+FDAKRLIGR++ED Q D+KHWPF+V+ + G P I+V Y GE
Sbjct: 54 GDAAKNQAAMNPRNTVFDAKRLIGRRYEDPETQKDIKHWPFKVIDNNGIPTIEVNYLGEK 113
Query: 182 KTFFPEEVSSMVLTKMKETAEAYLAK 259
K F +E+S+MVLTKMKE +EA L K
Sbjct: 114 KQFTAQEISAMVLTKMKEISEAKLNK 139
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 130 bits (315), Expect = 2e-31
Identities = 61/85 (71%), Positives = 74/85 (87%)
Frame = +1
Query: 256 KTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVL 435
K V+NAV+TVPAYFNDSQRQATK AG I+GLNVLR++NEPTAAA+AYGLDKK + V
Sbjct: 181 KDVKNAVVTVPAYFNDSQRQATKAAGAIAGLNVLRVVNEPTAAALAYGLDKK--NDAIVA 238
Query: 436 IFDLGGGTFDVSILTIEDGIFEVKS 510
+FDLGGGTFD+SIL + +G+FEV+S
Sbjct: 239 VFDLGGGTFDISILELNNGVFEVRS 263
Score = 72.5 bits (170), Expect = 6e-14
Identities = 34/86 (39%), Positives = 50/86 (58%)
Frame = +2
Query: 2 GDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGED 181
G +AK Q +NP NT F KRLIGR+F++ VQ D+K P+++V +
Sbjct: 99 GVSAKRQAVINPENTFFATKRLIGRRFKEPEVQRDIKEVPYKIVEHSNG---DAWLEARG 155
Query: 182 KTFFPEEVSSMVLTKMKETAEAYLAK 259
KT+ P ++ +L+KM+ETA YL K
Sbjct: 156 KTYSPSQIGGFILSKMRETASTYLGK 181
Score = 66.5 bits (155), Expect = 4e-12
Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 4/88 (4%)
Frame = +3
Query: 510 TAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQAS 689
T GDTHLGGEDFD +V H V+ FK+ DL+ ++ A++R+R A E+AK LSS ++
Sbjct: 264 TNGDTHLGGEDFDVALVRHIVETFKKNEGLDLSKDRLAVQRIREAAEKAKCELSSLSKTD 323
Query: 690 IEIDSLFEGI----DFYTSITRARFEEL 761
I + + I+RA+FE+L
Sbjct: 324 ISLPFITADATGPKHINMEISRAQFEKL 351
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 77.8 bits (183), Expect = 2e-15
Identities = 37/79 (46%), Positives = 52/79 (65%)
Frame = +3
Query: 519 DTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQASIEI 698
D +LGGE + +VN F +EF++K D N R+L +LR CE KR LS+ T AS +
Sbjct: 249 DENLGGEQLTDVLVNFFAKEFEKKNGIDPRKNARSLAKLRAQCEITKRVLSNGTTASAAV 308
Query: 699 DSLFEGIDFYTSITRARFE 755
DSL +GIDF++SI R R++
Sbjct: 309 DSLADGIDFHSSINRLRYD 327
Score = 56.0 bits (129), Expect = 6e-09
Identities = 24/81 (29%), Positives = 50/81 (61%)
Frame = +1
Query: 262 VQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIF 441
V V++VP YF D+QR+A + A +GL VL++I++P A +A ++ ++ V++
Sbjct: 163 VNGCVMSVPVYFTDAQRKALESAANEAGLPVLQLIHDPAAVILALMYSEEVLIDKTVVVA 222
Query: 442 DLGGGTFDVSILTIEDGIFEV 504
+ G +VS+++++ G+ +
Sbjct: 223 NFGATRSEVSVVSVKGGLMTI 243
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 71.3 bits (167), Expect = 1e-13
Identities = 37/88 (42%), Positives = 53/88 (60%), Gaps = 4/88 (4%)
Frame = +1
Query: 259 TVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGE----R 426
+V + VI++PA+F D QR+A +A I+GLN LR++N+ AAA+ YG+ K E R
Sbjct: 140 SVSDVVISIPAWFTDIQRRALLEAANIAGLNPLRLMNDNAAAALTYGITKTDLPEPESPR 199
Query: 427 NVLIFDLGGGTFDVSILTIEDGIFEVKS 510
V I D G + VSI+ G F +KS
Sbjct: 200 RVAIVDFGHSNYSVSIVEFSRGQFHIKS 227
Score = 70.5 bits (165), Expect = 3e-13
Identities = 33/84 (39%), Positives = 51/84 (60%)
Frame = +3
Query: 510 TAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQAS 689
T D +LG + D ++++F EFK KYK D+ +N +A RL TA ER K+ LS++ A
Sbjct: 228 TVCDRNLGSRNMDKALIDYFAAEFKEKYKIDVLSNPKATFRLATAVERLKKVLSANANAP 287
Query: 690 IEIDSLFEGIDFYTSITRARFEEL 761
+ ++ + ID + I R+ FEEL
Sbjct: 288 LNVEMIMNDIDASSFIKRSDFEEL 311
Score = 42.3 bits (95), Expect = 8e-05
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 GDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQ-ADMKHWPFEVVSDGGKPKIKVAYKGE 178
G+AAK+ A N NT+ KRL GR ++D ++ + ++ G KV Y E
Sbjct: 53 GEAAKSAEASNFRNTVGSLKRLAGRTYDDPEIKDIESNFISAKLTEVDGFVGAKVQYLNE 112
Query: 179 DKTFFPEEVSSMVLTKMKETAEAYL 253
+ F ++ + TK+K AEA L
Sbjct: 113 ETAFSNIQLIAAYFTKIKAIAEAEL 137
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 55.2 bits (127), Expect = 1e-08
Identities = 28/78 (35%), Positives = 43/78 (55%)
Frame = +3
Query: 528 LGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQASIEIDSL 707
L G + + +++ F +K+ DL+ N RAL RL R K LS++++A I+ L
Sbjct: 262 LSGNEINRKLIGFMKNSFYQKHGIDLSHNHRALARLEKEALRVKHILSANSEAIASIEEL 321
Query: 708 FEGIDFYTSITRARFEEL 761
+GIDF ITR+ E L
Sbjct: 322 ADGIDFRLKITRSVLESL 339
Score = 46.8 bits (106), Expect = 4e-06
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Frame = +1
Query: 262 VQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKK-GTGERNVLI 438
+ + V+TVP +FN+ QR +A I +VL +I++ A AI Y L + T +I
Sbjct: 160 ITDLVLTVPPHFNELQRSILLEAARILNKHVLALIDDNVAVAIEYSLSRSFSTDPTYNII 219
Query: 439 FDLGGGTFDVSILTIE 486
+D G G+ ++++ +
Sbjct: 220 YDSGSGSTSATVISFD 235
>SPBC215.10 |||haloacid dehalogenase-like
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 29.5 bits (63), Expect = 0.58
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 589 NTKRTSLPTRELLGVCVLHVRGQR-GPCHRPHKRALR*ILSLR 714
N K+ LP E + + + V G GP H+PH R LR + LR
Sbjct: 9 NQKKNVLPKPEDIQLIICDVDGTLLGPDHKPHPRNLRALKYLR 51
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +3
Query: 630 RLRTACERAKRTLSSSTQASIEIDSLFE-GIDFYTSITRARFEELTPICS 776
RLR +C RT+ S + + L + + F TS + L P C+
Sbjct: 391 RLRASCHSIARTMRSRHSDKVALSGLLDRAMQFLTSFISVCKKHLYPTCN 440
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 26.6 bits (56), Expect = 4.1
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +3
Query: 555 MVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGIDFYTS 734
+++ F EFK++ K D + L+ L + C R R SS SI ++ + +
Sbjct: 711 ILSSFSNEFKKRLKSDGTSIAHWLQGLASFCGRVFRRYSSLDCTSI-VEYVIKQFKVNQM 769
Query: 735 ITRARFEELTPICSGL-PWS 791
+EL +GL PW+
Sbjct: 770 FDLVILKELLSQMTGLQPWT 789
>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 435
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/61 (24%), Positives = 28/61 (45%)
Frame = +2
Query: 146 KPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLAKLCRMQLSRFPRTSMTLKDKPQK 325
K ++K K DK F ++ ++V K+ L K+C+ L +PR + +K
Sbjct: 19 KVEMKPFLKNLDKNLF-KKTYNLVAAKVSPKKVGLLNKVCKKDLLDWPRVKHVYQQNNEK 77
Query: 326 M 328
+
Sbjct: 78 L 78
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 26.2 bits (55), Expect = 5.4
Identities = 17/48 (35%), Positives = 20/48 (41%)
Frame = +1
Query: 400 LDKKGTGERNVLIFDLGGGTFDVSILTIEDGIFEVKSPPATPTWEVRT 543
LDK G+ I GG T SIL +GI VK + W T
Sbjct: 48 LDKAPAGKVKDYIASHGGHTVITSILIANNGIAAVKEIRSIRKWAYET 95
>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 513
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 415 TGERNVLIFDLGGGTFDVSILTIE-DGIFEVKSPPA 519
TG+ + ++ +GG T D+ ++ I G + K P A
Sbjct: 265 TGDGHKMVMSIGGSTVDLDLVQIHPTGFVDPKDPTA 300
>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 7.1
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -2
Query: 533 SQVGVAGGDFTSKIPSSMVRMDTSKVPPPRSKISTF-RSPVPFLSRP*AIAAAVG 372
S + V GD T+KIPS+ + +D + RS + F + VP L+ I+ + G
Sbjct: 696 SIIHVYAGDLTTKIPSAQLSIDNTS----RSLLGDFQKRNVPLLNLENPISGSQG 746
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,314,976
Number of Sequences: 5004
Number of extensions: 68360
Number of successful extensions: 242
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -