Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00148
         (795 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           28   0.11 
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           28   0.11 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   1.1  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              24   1.4  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   5.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   10.0 

>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 27.9 bits (59), Expect = 0.11
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -2

Query: 281 VITAFCTVLQDKLRQFPSFS*APWN*LPRGKRFCLH 174
           V+TAF     +  R F +F   P N LP  KRF  H
Sbjct: 50  VMTAFFKKYPEYQRYFTAFMDTPLNELPANKRFQAH 85


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 27.9 bits (59), Expect = 0.11
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -2

Query: 281 VITAFCTVLQDKLRQFPSFS*APWN*LPRGKRFCLH 174
           V+TAF     +  R F +F   P N LP  KRF  H
Sbjct: 50  VMTAFFKKYPEYQRYFTAFMDTPLNELPANKRFQAH 85


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 256 CKISFGSFLHFRKHHGTDFLGEKGF 182
           C+I+FGS++H  +     FL +KGF
Sbjct: 183 CRINFGSWVHSGEEVNI-FLDKKGF 206


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 14/58 (24%), Positives = 24/58 (41%)
 Frame = +2

Query: 92  TVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLAKLC 265
           T     + W  +  + G  PK+      E+  F P   + ++ +K  +  EA L  LC
Sbjct: 111 TTTVSARFWLMDCRNIGAVPKMATELY-EESLFVPYITNFIIYSKRMDVLEATLRVLC 167


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 307 QRQATKDAGTISGLNVLRIINEPTAAAIAYG 399
           Q +A K A  +   N   II+EPT     YG
Sbjct: 353 QAEAEKHAAMLYQYNFNIIISEPTERISPYG 383


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 16/59 (27%), Positives = 25/59 (42%)
 Frame = +1

Query: 346 LNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILTIEDGIFEVKSPPAT 522
           LN+  I   P+     Y +      + N+L  DL  G   V ++T   G+ +  SP  T
Sbjct: 787 LNISDIALYPSQTTHGYDIYASSIDKENILFLDLSTG--KVEMIT---GVGKATSPNLT 840


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,117
Number of Sequences: 438
Number of extensions: 4526
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)