Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00147
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S...   109   5e-25
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    30   0.37 
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    30   0.37 
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   0.85 
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    27   2.0  
SPCC1840.09 |||NAD dependent epimerase/dehydratase family protei...    27   3.4  
SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit L51...    26   4.5  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    26   4.5  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    26   6.0  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   6.0  
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    25   7.9  

>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score =  109 bits (261), Expect = 5e-25
 Identities = 52/82 (63%), Positives = 64/82 (78%)
 Frame = +3

Query: 261 ATSLDDMVSKLKRPRKIVLLVKAGFAVDEFVKKLIPLLSKGDIIIDGGNSQYLDTQKWCK 440
           A SL++ VSKLK+PR  +LLVKAG  VD  ++ L PLL KGDII+DGGNS Y DT + C+
Sbjct: 58  AHSLEEFVSKLKKPRVCILLVKAGKPVDYLIEGLAPLLEKGDIIVDGGNSHYPDTTRRCE 117

Query: 441 ELSGTGILYVGMGVSGGEDGAR 506
           EL+  GIL+VG GVSGGE+GAR
Sbjct: 118 ELAKKGILFVGSGVSGGEEGAR 139



 Score = 79.4 bits (187), Expect = 5e-16
 Identities = 38/57 (66%), Positives = 44/57 (77%), Gaps = 1/57 (1%)
 Frame = +1

Query: 94  MPQNE-ADIALIGLAVMGQNLILNMNDKGYVVCAFNRTVSKVEEFLKNEAKGTKVLG 261
           M Q E AD  LIGLAVMGQNLILN  DKG+ VC +NRT S+V+EFL NEAKG  ++G
Sbjct: 1   MSQKEVADFGLIGLAVMGQNLILNGADKGFTVCCYNRTTSRVDEFLANEAKGKSIVG 57



 Score = 75.4 bits (177), Expect = 7e-15
 Identities = 32/43 (74%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
 Frame = +2

Query: 509 GPSLMPGGHPAAWPHIKEIFQAICAKA-KDEPCCDWVREDGAG 634
           GPSLMPGG+PAAWP IK IFQ + AKA  +EPCCDWV E GAG
Sbjct: 141 GPSLMPGGNPAAWPRIKPIFQTLAAKAGNNEPCCDWVGEQGAG 183



 Score = 35.5 bits (78), Expect = 0.007
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +1

Query: 637 FVKMVHNGIEYGDMHL 684
           +VKMVHNGIEYGDM L
Sbjct: 185 YVKMVHNGIEYGDMQL 200


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +1

Query: 103  NEADIALIGLAVMGQNLILNMNDKGYVVCAFNRTVSK 213
            N   + L+ +  + Q+++L +N+KG +VC+ N T  K
Sbjct: 1241 NMVTLVLVPMMSLRQDMMLRVNEKGLLVCSGNWTAFK 1277


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +1

Query: 103  NEADIALIGLAVMGQNLILNMNDKGYVVCAFNRTVSK 213
            N   + L+ +  + Q+++L +N+KG +VC+ N T  K
Sbjct: 1241 NMVTLVLVPMMSLRQDMMLRVNEKGLLVCSGNWTAFK 1277


>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 230

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -1

Query: 284 YHVIQGGSPNTFVPLASFFRNSSTFDTV 201
           Y V+ G +P TF P AS   N  T  TV
Sbjct: 17  YLVVDGATPRTFAPSASVSINYGTLSTV 44


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 123 ECNISFILRHFFKLDFKSLSNY 58
           +C I FI  H++ +DF +L +Y
Sbjct: 422 DCKIDFIACHWYGIDFSNLQDY 443


>SPCC1840.09 |||NAD dependent epimerase/dehydratase family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 276

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -2

Query: 361 SFFTNSSTANPAFTKRTIFLGLFSLDTMSSKEVA 260
           S FT SS+ N A +    FLG  S + + S+EVA
Sbjct: 210 SLFTVSSSINRATSGALNFLGTASAEPLPSEEVA 243


>SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit
           L51-b|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 225

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = -2

Query: 388 ISPLLKSGISFFTNSST-ANPAFTKRTIFLGLFSLDTMSSKEVAPILLYP*LHFLEIPLP 212
           ISP L    + F++S+  + P      ++  L  LD+ S  E   + L   +   ++PLP
Sbjct: 106 ISPYLLQKYNTFSSSNPKSRPTLPPGILYAKLKLLDSFSDSEKKRLSLVSFIQTKKVPLP 165

Query: 211 LT 206
            T
Sbjct: 166 FT 167


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 123 ECNISFILRHFFKLDFKSLSNYFKQ 49
           ECN +  ++ F K DF  + ++F+Q
Sbjct: 266 ECNFNHNIKEFSKCDFTQMFHHFEQ 290


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -2

Query: 403 PPSIIISPLLKSGISFFTNSSTANPAFTKRT 311
           PPS    PL  S  S  TNSS A+    +RT
Sbjct: 325 PPSSATGPLYHSPQSSLTNSSVASADVQERT 355


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +1

Query: 103 NEADIAL-IGLAVMGQNLILNMNDK 174
           N  D+ L IGL  MG  LILNM D+
Sbjct: 402 NMHDLTLSIGLQTMGARLILNMVDR 426


>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 141 HNSQTYECNISFILRHFFKLDFKSLSNYFKQ 49
           H+S TY   ++ I R F   + KS+S  F Q
Sbjct: 488 HSSGTYRLRVTTISRSFITGNAKSISESFDQ 518


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,957,513
Number of Sequences: 5004
Number of extensions: 61263
Number of successful extensions: 168
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)