Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00147
(701 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0333 + 16474011-16475478,16475622-16475641 90 1e-18
06_01_0080 + 644021-645463 82 5e-16
01_06_0663 - 30991390-30992340 34 0.095
02_04_0261 + 21363787-21363891,21364185-21364286,21365854-213659... 33 0.22
04_04_1508 - 34072409-34072760,34073044-34073201 33 0.29
01_05_0431 - 22084474-22084635,22084740-22084844,22084931-220850... 30 1.5
03_05_0556 - 25564025-25564274,25565244-25565470 29 2.7
06_02_0086 - 11567390-11567634,11568316-11568341,11571082-115712... 29 4.7
10_08_0206 + 15809261-15809390,15810655-15810763,15811237-158112... 28 8.3
06_03_1062 - 27293119-27293313,27293390-27293548,27293877-272941... 28 8.3
04_03_0811 - 19909128-19912214 28 8.3
01_01_0431 + 3271839-3273192,3273481-3275148,3275346-3275416 28 8.3
>11_04_0333 + 16474011-16475478,16475622-16475641
Length = 495
Score = 90.2 bits (214), Expect = 1e-18
Identities = 42/75 (56%), Positives = 54/75 (72%)
Frame = +3
Query: 282 VSKLKRPRKIVLLVKAGFAVDEFVKKLIPLLSKGDIIIDGGNSQYLDTQKWCKELSGTGI 461
V L RPR +VLLV+AG AVD + L+P L GD I+DGGN Y +T++ +E + GI
Sbjct: 82 VLSLSRPRTVVLLVQAGRAVDATIDALVPYLDAGDAIVDGGNEWYQNTERRIEEAAARGI 141
Query: 462 LYVGMGVSGGEDGAR 506
LY+GMGVSGGE+GAR
Sbjct: 142 LYLGMGVSGGEEGAR 156
Score = 47.2 bits (107), Expect = 1e-05
Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
Frame = +1
Query: 115 IALIGLAVMGQNLILNMNDKGYVVCAFNRTVSKVEEFL-KNEAKGT-KVLG 261
I L GLA MGQNL LN+ +KG+ + +NRT +KV+ + + EA+G VLG
Sbjct: 24 IGLAGLATMGQNLALNIAEKGFPISVYNRTAAKVDATVSRAEAEGALPVLG 74
Score = 43.6 bits (98), Expect = 2e-04
Identities = 19/42 (45%), Positives = 27/42 (64%)
Frame = +2
Query: 509 GPSLMPGGHPAAWPHIKEIFQAICAKAKDEPCCDWVREDGAG 634
GPSLMPGGH A+ +I++I + A+ +D C +V GAG
Sbjct: 158 GPSLMPGGHIDAYNNIRDILEKAAAQTEDGACVTFVGPGGAG 199
Score = 37.5 bits (83), Expect = 0.010
Identities = 16/18 (88%), Positives = 16/18 (88%)
Frame = +1
Query: 637 FVKMVHNGIEYGDMHLSA 690
FVKMVHNGIEYGDM L A
Sbjct: 201 FVKMVHNGIEYGDMQLIA 218
>06_01_0080 + 644021-645463
Length = 480
Score = 81.8 bits (193), Expect = 5e-16
Identities = 37/75 (49%), Positives = 54/75 (72%)
Frame = +3
Query: 282 VSKLKRPRKIVLLVKAGFAVDEFVKKLIPLLSKGDIIIDGGNSQYLDTQKWCKELSGTGI 461
V+ +++PR +++LVKAG VD+ + L L +GD IIDGGN Y +T++ K + G+
Sbjct: 64 VNSIQKPRVVIMLVKAGAPVDQTIATLAAHLEQGDCIIDGGNEWYENTERREKAMEERGL 123
Query: 462 LYVGMGVSGGEDGAR 506
LY+GMGVSGGE+GAR
Sbjct: 124 LYLGMGVSGGEEGAR 138
Score = 50.0 bits (114), Expect = 2e-06
Identities = 22/36 (61%), Positives = 28/36 (77%)
Frame = +1
Query: 115 IALIGLAVMGQNLILNMNDKGYVVCAFNRTVSKVEE 222
I L GLAVMGQNL LN+ +KG+ + +NRT SKV+E
Sbjct: 6 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDE 41
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = +2
Query: 509 GPSLMPGGHPAAWPHIKEIFQAICAKAKDE-PCCDWVREDGAG 634
GPSLMPGG A+ +I++I + A+ D PC ++ + G+G
Sbjct: 140 GPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYIGKGGSG 182
Score = 36.7 bits (81), Expect = 0.018
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = +1
Query: 637 FVKMVHNGIEYGDMHL 684
FVKMVHNGIEYGDM L
Sbjct: 184 FVKMVHNGIEYGDMQL 199
>01_06_0663 - 30991390-30992340
Length = 316
Score = 34.3 bits (75), Expect = 0.095
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +1
Query: 115 IALIGLAVMGQNLILNMNDKGYVVCAFNRTVSKVEEFLKNEA 240
+A +G VMGQ++ ++ GY + +NRT SK E + A
Sbjct: 22 VAWVGTGVMGQSMAGHLLAAGYALTVYNRTASKAEGLVSRGA 63
>02_04_0261 +
21363787-21363891,21364185-21364286,21365854-21365964,
21366233-21366334,21366901-21367016,21367180-21367258,
21367347-21367517,21367617-21367712
Length = 293
Score = 33.1 bits (72), Expect = 0.22
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 112 DIALIGLAVMGQNLILNMNDKGYVVCAFNRTVSKV 216
++ +GL +MG+ + N+ G+ V +NRT+SKV
Sbjct: 2 EVGFLGLGIMGKAMAANLLRHGFRVTVWNRTLSKV 36
>04_04_1508 - 34072409-34072760,34073044-34073201
Length = 169
Score = 32.7 bits (71), Expect = 0.29
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = -1
Query: 290 FRYHVIQGGSPN-TFVPLASFFRNSSTFDTV 201
F +H + G+PN T V +AS RNSSTF V
Sbjct: 31 FYFHEVDAGTPNATVVNVASLHRNSSTFGDV 61
>01_05_0431 -
22084474-22084635,22084740-22084844,22084931-22085003,
22085109-22085179,22085429-22085548,22085631-22085715,
22085812-22085867,22085978-22086053,22086546-22086611,
22086843-22087060
Length = 343
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 115 IALIGLAVMGQNLILNMNDKGYVVCAFNRTVSKVEEFLKNEAK 243
+ +GL +MG + N+ + G V +NRT SK + L AK
Sbjct: 53 VGFLGLGIMGAPMASNLINAGCDVTVWNRTRSKCDPLLSLGAK 95
>03_05_0556 - 25564025-25564274,25565244-25565470
Length = 158
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -2
Query: 445 NSLHHFCVSKYCELPPSIIISPLLKSGISFFTNSSTAN-PAFTKRTIFLG 299
NS H + LPP PLL + FFT+S++ P F KR + G
Sbjct: 28 NSSHPCKADEGSRLPPGSRGLPLLGESLEFFTSSTSLELPVFFKRRLNRG 77
>06_02_0086 -
11567390-11567634,11568316-11568341,11571082-11571224,
11571569-11571682,11571855-11572888,11574723-11575047,
11576843-11577124
Length = 722
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -3
Query: 663 NSIVHHFDKRPAPSSRTQSQHGSSLA 586
N IVH+ DK SS+ QSQ GS+ A
Sbjct: 415 NRIVHNSDKLALESSKEQSQSGSASA 440
>10_08_0206 +
15809261-15809390,15810655-15810763,15811237-15811265,
15811721-15813048
Length = 531
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -2
Query: 388 ISPLLKSGISFFTNSSTANPAFTKRTIFLGLFSLDTMSSKEVAP 257
IS +++SG++ +TN + +NP + L L SS E+ P
Sbjct: 282 ISKVIESGLTSYTNRTVSNPGNADHILHLCHELLKPTSSAEMPP 325
>06_03_1062 -
27293119-27293313,27293390-27293548,27293877-27294194,
27294535-27294795,27294901-27294978,27295707-27295901
Length = 401
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +3
Query: 270 LDDMVSKLKRPRKIVLLVKAGFAVDEFVKKLIPLLSKGDIIIDGGNSQY 416
LD +V + P+K + G V + + LL+K DI+I GG Y
Sbjct: 180 LDYLVGAVANPKKPFAAIVGGSKVSTKIGVIESLLAKVDILILGGGMIY 228
>04_03_0811 - 19909128-19912214
Length = 1028
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 199 RTVSKVEEFLKNEAKGTKVLGLPPWM 276
R++S + L E GTK+ LP WM
Sbjct: 448 RSISALSSLLTLEISGTKLTSLPDWM 473
>01_01_0431 + 3271839-3273192,3273481-3275148,3275346-3275416
Length = 1030
Score = 27.9 bits (59), Expect = 8.3
Identities = 20/67 (29%), Positives = 29/67 (43%)
Frame = -2
Query: 421 SKYCELPPSIIISPLLKSGISFFTNSSTANPAFTKRTIFLGLFSLDTMSSKEVAPILLYP 242
+K C P + L+ TN S A PA +L L T+ + + ILL
Sbjct: 302 NKLCVQLPEFLPGSRLEVLDLILTNRSNAIPASVVNLKYLKHLGLTTVEASMNSDILLIR 361
Query: 241 *LHFLEI 221
LH+LE+
Sbjct: 362 ELHWLEV 368
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,815,280
Number of Sequences: 37544
Number of extensions: 394820
Number of successful extensions: 1066
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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