Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00147
         (701 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)                        76   2e-21
SB_12107| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_47340| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
          Length = 870

 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 31/42 (73%), Positives = 34/42 (80%)
 Frame = +2

Query: 509 GPSLMPGGHPAAWPHIKEIFQAICAKAKDEPCCDWVREDGAG 634
           GPSLMPGG   AWPHIK IFQAI AKA ++PCCDWV  DG+G
Sbjct: 184 GPSLMPGGSEKAWPHIKPIFQAIAAKAGNDPCCDWVGGDGSG 225



 Score = 72.1 bits (169), Expect(2) = 2e-21
 Identities = 31/48 (64%), Positives = 38/48 (79%)
 Frame = +3

Query: 363 IPLLSKGDIIIDGGNSQYLDTQKWCKELSGTGILYVGMGVSGGEDGAR 506
           +PLL  GDIIIDGGNS+Y D+ + CK L   G+L+VG GVSGGE+GAR
Sbjct: 135 VPLLESGDIIIDGGNSEYKDSMRRCKALEERGLLFVGSGVSGGEEGAR 182



 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 29/51 (56%), Positives = 33/51 (64%)
 Frame = +1

Query: 109 ADIALIGLAVMGQNLILNMNDKGYVVCAFNRTVSKVEEFLKNEAKGTKVLG 261
           ADIALIGLAVM              VCA NRTV KV+ FL NEAKGT+++G
Sbjct: 31  ADIALIGLAVM--------------VCAHNRTVEKVDRFLANEAKGTRIVG 67



 Score = 48.0 bits (109), Expect(2) = 2e-21
 Identities = 21/35 (60%), Positives = 29/35 (82%)
 Frame = +3

Query: 261 ATSLDDMVSKLKRPRKIVLLVKAGFAVDEFVKKLI 365
           A SL +MVSKLK+PR++++LVKAG AVD F+  L+
Sbjct: 68  AHSLQEMVSKLKKPRRVMILVKAGSAVDAFIDHLV 102



 Score = 35.5 bits (78), Expect = 0.042
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +1

Query: 637 FVKMVHNGIEYGDMHL 684
           FVKMVHNGIEYGDM +
Sbjct: 227 FVKMVHNGIEYGDMQV 242


>SB_12107| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 560 LLYAAMQQDAHQASKMVLSCTIFTSTYTHSNIKYSC 453
           LLY +M     +A K++L CT   S + HS   +SC
Sbjct: 197 LLYGSMNDHYAKAFKILLRCT-SKSRFNHSTFNHSC 231


>SB_47340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 572 AICAKAKDEPCCDWVREDGAGLLSKWCTMEL 664
           A CAKA+ +  C    E+   L+  WC  E+
Sbjct: 142 AACAKAEVQGACPHTEEEKRALVGAWCHPEV 172


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,632,706
Number of Sequences: 59808
Number of extensions: 438064
Number of successful extensions: 1093
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)