Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00147
         (701 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    26   0.40 
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         24   1.6  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    24   1.6  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    24   1.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   4.9  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.5  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   8.6  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   8.6  

>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 402 GNSQYLDTQKWCKELSGTGILYVGM 476
           G+   L+TQ   K +S  G+L+VG+
Sbjct: 295 GSEDILNTQSLAKAVSKNGVLFVGL 319


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 402 GNSQYLDTQKWCKELSGTGILYVGM 476
           G    LDTQ   K +S +G+L+ G+
Sbjct: 297 GVQNILDTQSSAKVVSKSGVLFFGL 321


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 402 GNSQYLDTQKWCKELSGTGILYVGM 476
           G    LDTQ   K +S +G+L+ G+
Sbjct: 297 GVQNILDTQSSAKVVSKSGVLFFGL 321


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 402 GNSQYLDTQKWCKELSGTGILYVGM 476
           G    LDTQ   K +S +G+L+ G+
Sbjct: 297 GVQNILDTQSSAKVVSKSGVLFFGL 321


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 675 ITIFNSIVHHFDKRPAPSSRTQSQHGSSLALAH 577
           +T  NSI H  D      +  +++H S+L + H
Sbjct: 218 LTNSNSIKHESDNSDYSHTTDENRHSSTLDIDH 250


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 393 IDGGNSQYLDTQKWCKELS 449
           ID  N+  LDT+KW  ++S
Sbjct: 371 IDEYNNNDLDTKKWNNKIS 389


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 144 THNSQTYECNISFILRHFFKLDFKSLSNY 58
           T  SQ Y   +S +L H F     S+S+Y
Sbjct: 478 TGTSQMYAEKLSELLGHAFHSQVLSMSDY 506


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/30 (23%), Positives = 15/30 (50%)
 Frame = -2

Query: 397 SIIISPLLKSGISFFTNSSTANPAFTKRTI 308
           ++  SPLL  G+ +      +NP + +  +
Sbjct: 267 NLYYSPLLSHGLYYVDTEQFSNPQYEENNV 296


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 284 YHVIQGGSPNTFVPLASFF 228
           +H+IQ  +P+T V + S+F
Sbjct: 201 HHLIQTFAPSTLVVMLSWF 219


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,319
Number of Sequences: 438
Number of extensions: 3661
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)