Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00147
(701 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02360.2 68416.m00220 6-phosphogluconate dehydrogenase family... 86 2e-17
At3g02360.1 68416.m00219 6-phosphogluconate dehydrogenase family... 86 2e-17
At5g41670.2 68418.m05063 6-phosphogluconate dehydrogenase family... 84 7e-17
At5g41670.1 68418.m05062 6-phosphogluconate dehydrogenase family... 84 7e-17
At1g64190.1 68414.m07272 6-phosphogluconate dehydrogenase family... 83 2e-16
At3g25530.1 68416.m03174 6-phosphogluconate dehydrogenase NAD-bi... 38 0.006
At4g29120.1 68417.m04168 6-phosphogluconate dehydrogenase NAD-bi... 35 0.045
At2g30150.1 68415.m03669 UDP-glucoronosyl/UDP-glucosyl transfera... 29 2.3
At1g71180.1 68414.m08213 6-phosphogluconate dehydrogenase NAD-bi... 29 3.9
At5g47560.1 68418.m05871 sodium/dicarboxylate cotransporter, put... 28 6.9
At1g17650.1 68414.m02185 6-phosphogluconate dehydrogenase NAD-bi... 28 6.9
>At3g02360.2 68416.m00220 6-phosphogluconate dehydrogenase family
protein contains Pfam profiles: PF00393
6-phosphogluconate dehydrogenase C-terminal domain,
PF03446 NAD binding domain of 6-phosphogluconate
;similar to 6-phosphogluconate dehydrogenase GB:BAA22812
GI:2529229 [Glycine max]
Length = 486
Score = 86.2 bits (204), Expect = 2e-17
Identities = 39/78 (50%), Positives = 55/78 (70%)
Frame = +3
Query: 273 DDMVSKLKRPRKIVLLVKAGFAVDEFVKKLIPLLSKGDIIIDGGNSQYLDTQKWCKELSG 452
+ V +++PR I++LVKAG VD+ +K L L KGD I+DGGN Y +T++ K ++
Sbjct: 63 ESFVKSIQKPRVIIMLVKAGSPVDQTIKTLSAYLEKGDCIVDGGNEWYENTERREKAVAE 122
Query: 453 TGILYVGMGVSGGEDGAR 506
G LY+GMGVSGGE+GAR
Sbjct: 123 NGFLYLGMGVSGGEEGAR 140
Score = 51.2 bits (117), Expect = 6e-07
Identities = 23/43 (53%), Positives = 31/43 (72%)
Frame = +1
Query: 115 IALIGLAVMGQNLILNMNDKGYVVCAFNRTVSKVEEFLKNEAK 243
I L GLAVMGQNL LN+ +KG+ + +NRT SKV+E ++ K
Sbjct: 8 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKK 50
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = +2
Query: 509 GPSLMPGGHPAAWPHIKEIFQAICAKAKDE-PCCDWVREDGAG 634
GPS+MPGG A+ +I++I + A+ +D PC ++ + G+G
Sbjct: 142 GPSMMPGGSYEAYKNIEDIVLKVAAQVRDSGPCVTYIGKGGSG 184
Score = 37.5 bits (83), Expect = 0.009
Identities = 16/18 (88%), Positives = 16/18 (88%)
Frame = +1
Query: 637 FVKMVHNGIEYGDMHLSA 690
FVKMVHNGIEYGDM L A
Sbjct: 186 FVKMVHNGIEYGDMQLIA 203
>At3g02360.1 68416.m00219 6-phosphogluconate dehydrogenase family
protein contains Pfam profiles: PF00393
6-phosphogluconate dehydrogenase C-terminal domain,
PF03446 NAD binding domain of 6-phosphogluconate
;similar to 6-phosphogluconate dehydrogenase GB:BAA22812
GI:2529229 [Glycine max]
Length = 486
Score = 86.2 bits (204), Expect = 2e-17
Identities = 39/78 (50%), Positives = 55/78 (70%)
Frame = +3
Query: 273 DDMVSKLKRPRKIVLLVKAGFAVDEFVKKLIPLLSKGDIIIDGGNSQYLDTQKWCKELSG 452
+ V +++PR I++LVKAG VD+ +K L L KGD I+DGGN Y +T++ K ++
Sbjct: 63 ESFVKSIQKPRVIIMLVKAGSPVDQTIKTLSAYLEKGDCIVDGGNEWYENTERREKAVAE 122
Query: 453 TGILYVGMGVSGGEDGAR 506
G LY+GMGVSGGE+GAR
Sbjct: 123 NGFLYLGMGVSGGEEGAR 140
Score = 51.2 bits (117), Expect = 6e-07
Identities = 23/43 (53%), Positives = 31/43 (72%)
Frame = +1
Query: 115 IALIGLAVMGQNLILNMNDKGYVVCAFNRTVSKVEEFLKNEAK 243
I L GLAVMGQNL LN+ +KG+ + +NRT SKV+E ++ K
Sbjct: 8 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKK 50
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = +2
Query: 509 GPSLMPGGHPAAWPHIKEIFQAICAKAKDE-PCCDWVREDGAG 634
GPS+MPGG A+ +I++I + A+ +D PC ++ + G+G
Sbjct: 142 GPSMMPGGSYEAYKNIEDIVLKVAAQVRDSGPCVTYIGKGGSG 184
Score = 37.5 bits (83), Expect = 0.009
Identities = 16/18 (88%), Positives = 16/18 (88%)
Frame = +1
Query: 637 FVKMVHNGIEYGDMHLSA 690
FVKMVHNGIEYGDM L A
Sbjct: 186 FVKMVHNGIEYGDMQLIA 203
>At5g41670.2 68418.m05063 6-phosphogluconate dehydrogenase family
protein contains Pfam profiles: PF00393
6-phosphogluconate dehydrogenase C-terminal domain,
PF03446 NAD binding domain of 6-phosphogluconate
Length = 487
Score = 84.2 bits (199), Expect = 7e-17
Identities = 38/77 (49%), Positives = 52/77 (67%)
Frame = +3
Query: 276 DMVSKLKRPRKIVLLVKAGFAVDEFVKKLIPLLSKGDIIIDGGNSQYLDTQKWCKELSGT 455
D V ++RPR +++LVKAG VD+ + L + GD IIDGGN Y +T++ E
Sbjct: 65 DFVLSIQRPRSVIILVKAGAPVDQTISALSEYMEPGDCIIDGGNEWYQNTERRIVEAEKK 124
Query: 456 GILYVGMGVSGGEDGAR 506
G+LY+GMGVSGGE+GAR
Sbjct: 125 GLLYLGMGVSGGEEGAR 141
Score = 52.8 bits (121), Expect = 2e-07
Identities = 27/46 (58%), Positives = 32/46 (69%), Gaps = 3/46 (6%)
Frame = +1
Query: 115 IALIGLAVMGQNLILNMNDKGYVVCAFNRTVSKVEEFL---KNEAK 243
I L GLAVMGQNL LN+ DKG+ + +NRT SKV+E L NE K
Sbjct: 9 IGLAGLAVMGQNLALNIADKGFPISVYNRTTSKVDETLDRASNEGK 54
Score = 47.2 bits (107), Expect = 1e-05
Identities = 18/42 (42%), Positives = 29/42 (69%)
Frame = +2
Query: 509 GPSLMPGGHPAAWPHIKEIFQAICAKAKDEPCCDWVREDGAG 634
GPSLMPGG A+ ++K+I + + A+ +D PC ++ E G+G
Sbjct: 143 GPSLMPGGSFTAYNNVKDILEKVAAQVEDGPCVTYIGEGGSG 184
Score = 36.7 bits (81), Expect = 0.015
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = +1
Query: 637 FVKMVHNGIEYGDMHL 684
FVKMVHNGIEYGDM L
Sbjct: 186 FVKMVHNGIEYGDMQL 201
>At5g41670.1 68418.m05062 6-phosphogluconate dehydrogenase family
protein contains Pfam profiles: PF00393
6-phosphogluconate dehydrogenase C-terminal domain,
PF03446 NAD binding domain of 6-phosphogluconate
Length = 487
Score = 84.2 bits (199), Expect = 7e-17
Identities = 38/77 (49%), Positives = 52/77 (67%)
Frame = +3
Query: 276 DMVSKLKRPRKIVLLVKAGFAVDEFVKKLIPLLSKGDIIIDGGNSQYLDTQKWCKELSGT 455
D V ++RPR +++LVKAG VD+ + L + GD IIDGGN Y +T++ E
Sbjct: 65 DFVLSIQRPRSVIILVKAGAPVDQTISALSEYMEPGDCIIDGGNEWYQNTERRIVEAEKK 124
Query: 456 GILYVGMGVSGGEDGAR 506
G+LY+GMGVSGGE+GAR
Sbjct: 125 GLLYLGMGVSGGEEGAR 141
Score = 52.8 bits (121), Expect = 2e-07
Identities = 27/46 (58%), Positives = 32/46 (69%), Gaps = 3/46 (6%)
Frame = +1
Query: 115 IALIGLAVMGQNLILNMNDKGYVVCAFNRTVSKVEEFL---KNEAK 243
I L GLAVMGQNL LN+ DKG+ + +NRT SKV+E L NE K
Sbjct: 9 IGLAGLAVMGQNLALNIADKGFPISVYNRTTSKVDETLDRASNEGK 54
Score = 47.2 bits (107), Expect = 1e-05
Identities = 18/42 (42%), Positives = 29/42 (69%)
Frame = +2
Query: 509 GPSLMPGGHPAAWPHIKEIFQAICAKAKDEPCCDWVREDGAG 634
GPSLMPGG A+ ++K+I + + A+ +D PC ++ E G+G
Sbjct: 143 GPSLMPGGSFTAYNNVKDILEKVAAQVEDGPCVTYIGEGGSG 184
Score = 36.7 bits (81), Expect = 0.015
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = +1
Query: 637 FVKMVHNGIEYGDMHL 684
FVKMVHNGIEYGDM L
Sbjct: 186 FVKMVHNGIEYGDMQL 201
>At1g64190.1 68414.m07272 6-phosphogluconate dehydrogenase family
protein contains Pfam profiles: PF00393
6-phosphogluconate dehydrogenase C-terminal domain,
PF03446 NAD binding domain of 6-phosphogluconate
Length = 487
Score = 82.6 bits (195), Expect = 2e-16
Identities = 37/77 (48%), Positives = 51/77 (66%)
Frame = +3
Query: 276 DMVSKLKRPRKIVLLVKAGFAVDEFVKKLIPLLSKGDIIIDGGNSQYLDTQKWCKELSGT 455
D V ++RPR +++LVKAG VD+ + + GD IIDGGN Y +T++ E
Sbjct: 65 DFVLSIQRPRSLIILVKAGAPVDQTIDAFSEYMEPGDCIIDGGNEWYQNTERRISEAEQK 124
Query: 456 GILYVGMGVSGGEDGAR 506
G+LY+GMGVSGGE+GAR
Sbjct: 125 GLLYLGMGVSGGEEGAR 141
Score = 51.6 bits (118), Expect = 5e-07
Identities = 24/42 (57%), Positives = 30/42 (71%)
Frame = +1
Query: 115 IALIGLAVMGQNLILNMNDKGYVVCAFNRTVSKVEEFLKNEA 240
I L GLAVMGQNL LN+ +KG+ + +NRT SKV+E L A
Sbjct: 9 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETLDRAA 50
Score = 47.6 bits (108), Expect = 8e-06
Identities = 19/42 (45%), Positives = 29/42 (69%)
Frame = +2
Query: 509 GPSLMPGGHPAAWPHIKEIFQAICAKAKDEPCCDWVREDGAG 634
GPSLMPGG A+ +IK+I + + A+ +D PC ++ E G+G
Sbjct: 143 GPSLMPGGSFQAYDNIKDILEKVAAQVEDGPCVTYIGEGGSG 184
Score = 36.7 bits (81), Expect = 0.015
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = +1
Query: 637 FVKMVHNGIEYGDMHL 684
FVKMVHNGIEYGDM L
Sbjct: 186 FVKMVHNGIEYGDMQL 201
>At3g25530.1 68416.m03174 6-phosphogluconate dehydrogenase
NAD-binding domain-containing protein low similarity to
SP|P23523 2-hydroxy-3-oxopropionate reductase (EC
1.1.1.60) (Tartronate semialdehyde reductase)
{Escherichia coli}; contains Pfam profile PF03446: NAD
binding domain of 6-phosphogluconate dehydrogenase;
supporting cDNA gi|15375067|gb|AY044183.1|
Length = 289
Score = 37.9 bits (84), Expect = 0.006
Identities = 14/43 (32%), Positives = 29/43 (67%)
Frame = +1
Query: 112 DIALIGLAVMGQNLILNMNDKGYVVCAFNRTVSKVEEFLKNEA 240
++ +GL +MG+ + +N+ G+ V +NRT+SK +E +++ A
Sbjct: 2 EVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGA 44
>At4g29120.1 68417.m04168 6-phosphogluconate dehydrogenase
NAD-binding domain-containing protein similar to
SP|P23523 2-hydroxy-3-oxopropionate reductase (EC
1.1.1.60) (Tartronate semialdehyde reductase)
{Escherichia coli}; contains Pfam profile PF03446: NAD
binding domain of 6-phosphogluconate dehydrogenase
Length = 334
Score = 35.1 bits (77), Expect = 0.045
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +1
Query: 97 PQNEADIALIGLAVMGQNLILNMNDKGYVVCAFNRTVSKVEEFL 228
P N I IG VMG+++ ++ GY V FNRT+SK + +
Sbjct: 35 PSN-TKIGWIGTGVMGRSMCGHLIKAGYTVTVFNRTISKAQTLI 77
>At2g30150.1 68415.m03669 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 440
Score = 29.5 bits (63), Expect = 2.3
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
Frame = +3
Query: 336 AVDEFVKKL-IPLLSKGDII----IDGGN-SQYLDTQKWCKELSGTGILYVGMGVSGGED 497
A+D F K P+ S G +I + GN ++ LD KW E + +LY+ G
Sbjct: 209 AIDFFTSKFDFPVYSTGPLIPLEELSVGNENRELDYFKWLDEQPESSVLYISQGSFLSVS 268
Query: 498 GAR*DHL*CLVGILLHGRI*KKFSKPYALKLKMNRAVTGSVKMEQAFC 641
A+ + + +VG+ G K F +LK+ A+ GS+ + ++C
Sbjct: 269 EAQMEEI--VVGVREAGV--KFFWVARGGELKLKEALEGSLGVVVSWC 312
>At1g71180.1 68414.m08213 6-phosphogluconate dehydrogenase
NAD-binding domain-containing protein similar to
SP|P23523 2-hydroxy-3-oxopropionate reductase (EC
1.1.1.60) (Tartronate semialdehyde reductase)
{Escherichia coli}; contains Pfam profile PF03446: NAD
binding domain of 6-phosphogluconate dehydrogenase
Length = 318
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/60 (23%), Positives = 30/60 (50%)
Frame = +1
Query: 88 KKMPQNEADIALIGLAVMGQNLILNMNDKGYVVCAFNRTVSKVEEFLKNEAKGTKVLGLP 267
K + ++ I IG+ +MG ++ ++ GY V + R + K ++ + KG ++ P
Sbjct: 28 KLIDPSKTRIGWIGIGIMGSAMVSHIIAAGYSVTVYARDLRKTKDL---QTKGARIANSP 84
>At5g47560.1 68418.m05871 sodium/dicarboxylate cotransporter,
putative similar to SWISS-PROT:Q13183 renal
sodium/dicarboxylate cotransporter [Human]{Homo sapiens}
Length = 540
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Frame = +3
Query: 294 KRPRKIVLLVKAGFAVDEFVKK--LIPLLSKGDIIID 398
K P IVLL+ AGFA+ + V+ L +LSKG + ++
Sbjct: 387 KLPWNIVLLLGAGFAIADGVRTSGLAEVLSKGLVFLE 423
>At1g17650.1 68414.m02185 6-phosphogluconate dehydrogenase
NAD-binding domain-containing protein low similarity to
SP|P23523 2-hydroxy-3-oxopropionate reductase (EC
1.1.1.60) (Tartronate semialdehyde reductase)
{Escherichia coli}; contains Pfam profile PF03446: NAD
binding domain of 6-phosphogluconate dehydrogenase
Length = 343
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1
Query: 115 IALIGLAVMGQNLILNMNDKGYVVCAFNRTVSKVEEFLKNEAK 243
I +G+ +MG + N+ G V +NRT SK + + AK
Sbjct: 54 IGFLGMGIMGSPMAQNLIKAGCDVTVWNRTKSKCDPLVGLGAK 96
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,309,474
Number of Sequences: 28952
Number of extensions: 319080
Number of successful extensions: 802
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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