Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00146
         (740 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       22   4.5  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   4.5  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    22   4.5  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    22   6.0  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    22   6.0  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   7.9  

>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 257 PSFTVKYMHSNAN 295
           P FT KY H N N
Sbjct: 58  PGFTGKYCHENIN 70


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 160 SPSCRSDGIPTPECSSANPRLENSS 234
           SPS     +PT   S++NP   + S
Sbjct: 76  SPSSTPSSLPTQRTSTSNPTYSSRS 100


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/30 (33%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = -3

Query: 327 LFIKRLVKF--FIFAFECMYFTVKLGPMST 244
           + I  L++F   +FAF   Y+++ + P+ST
Sbjct: 538 IIIGCLIQFNTIVFAFCYCYYSISIRPIST 567


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 506 VPRLLVQHIQECLN 547
           V R L+QH+  CLN
Sbjct: 131 VKRRLLQHLASCLN 144


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 608 SAMHEDPISFTLEFYF 655
           S++ E  + FTL+FYF
Sbjct: 77  SSLSEVKMDFTLDFYF 92


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 5/15 (33%), Positives = 11/15 (73%)
 Frame = -2

Query: 316  EACKVFHICIRVHVL 272
            E+C  F++C+  H++
Sbjct: 1216 ESCSSFYVCVNGHLV 1230


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,321
Number of Sequences: 336
Number of extensions: 3604
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)