Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00146
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    45   1e-05
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    39   7e-04
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    33   0.032
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    28   1.6  
SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT |Schizosa...    26   4.9  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   6.5  
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo...    26   6.5  

>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 20/51 (39%), Positives = 27/51 (52%)
 Frame = +3

Query: 477 RASNGSQCKGYPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQCMKTP 629
           +   G   KG P+FW    +NV  LSEM+   DE  L  L DI++  M+ P
Sbjct: 154 KQEGGDDTKGIPEFWLTAMKNVLSLSEMITPEDEGALSHLVDIRISYMEKP 204



 Score = 33.1 bits (72), Expect = 0.043
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +2

Query: 164 LHAEAMASLPPNVRRRIRALRTLQKEFVDIGPSFTVKYMH-SNANMKNFTSLFMK 325
           L +E ++ LP  V+RRI  LR LQK + D+   F  +      A  K +  +F +
Sbjct: 63  LTSEGVSELPEAVQRRISGLRGLQKRYSDLESQFQKELFELEKAYAKKYAPIFKR 117


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 39.1 bits (87), Expect = 7e-04
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +3

Query: 501 KGYPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIK 608
           KG P+FW     NV ++ EM+   DE +L+ L DI+
Sbjct: 164 KGIPEFWLTCLHNVFLVGEMITPEDENVLRSLSDIR 199


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 33.5 bits (73), Expect = 0.032
 Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
 Frame = -3

Query: 600 LASILEWVHHVLASFR*ALRHS*ICCTKSLGTLYIGIH-WRLDSLVILLFLTLSDGSI-- 430
           LAS++ +V   +A F  +L +S    T  L   Y G+  + + ++ ILLF ++  G++  
Sbjct: 628 LASVMYYVAEQVAFF--SLGNSNSLATVDLSQAYTGLDSYNIFAVGILLFTSVFAGALWW 685

Query: 429 -LYRPS*LFFFSVITPWVETFIIIRFIC 349
            L++P  +   SV T W+ + I + F+C
Sbjct: 686 CLHQPKRMMDRSVKTFWIMSSISLTFLC 713


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 148 GHHKSPSCRSDGIPTPECSSANPRLENSSEGVCRH 252
           GHHK+P CR+  +      S N R E   + V RH
Sbjct: 485 GHHKNPKCRAKKLVV---ESRNGRREYVQDAVRRH 516


>SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -3

Query: 516 SLGTLY-IGIHWRLDSLVILLFLTLSDGSILYRPS*LFFFSVITPWVETFIII 361
           S+G  Y IG+H   D +++LLF    D    Y  +  F+ S   PW+  FI+I
Sbjct: 55  SIGLFYLIGVHHLYDGVLVLLF----DALFTYFVA-AFYRSSRMPWI-IFIVI 101


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 107  HLLKSGVTRNEMIAAITNRLHAEAMASLP 193
            HLL++  T +E  AA   +LH + + S P
Sbjct: 1596 HLLRNSATNDETKAAFVYQLHKQGILSEP 1624


>SPBC1604.04 |||thiamine pyrophosphate
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 469 KAIEPPMDPNVKGTQTFGTTYSGMSQC 549
           KAI  P+D  VK  QTF + Y     C
Sbjct: 207 KAIMFPVDTVVKTLQTFPSNYKSFKDC 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,010,097
Number of Sequences: 5004
Number of extensions: 60077
Number of successful extensions: 180
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)