Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00146
         (740 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.)              57   1e-08
SB_16619| Best HMM Match : Dynamitin (HMM E-Value=1.1)                 29   5.2  
SB_51137| Best HMM Match : Fibrinogen_C (HMM E-Value=0.23)             28   6.9  
SB_41567| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_33233| Best HMM Match : Vicilin_N (HMM E-Value=1)                   28   6.9  
SB_56175| Best HMM Match : RRM_1 (HMM E-Value=0.27)                    28   9.1  
SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_12927| Best HMM Match : ATP-synt_A (HMM E-Value=4.3)                28   9.1  

>SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 340

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 23/37 (62%), Positives = 29/37 (78%)
 Frame = +3

Query: 501 KGYPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKV 611
           KG P+FW    +NV +LSEM+QEHDEPILK L D++V
Sbjct: 238 KGIPEFWLTAMKNVELLSEMIQEHDEPILKHLHDVRV 274



 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 23/68 (33%), Positives = 29/68 (42%)
 Frame = +1

Query: 244 CRHWAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDECLNPWRDDTEEEELARA 423
           C+   KFY EVHA               R  I +G  EP D+EC   W  D E+E+ A  
Sbjct: 143 CKLEGKFYEEVHALECKYAEKFKPFYEKRRNIASGGVEPTDEEC--RWPSDAEDEDEAEE 200

Query: 424 VQNAAITE 447
            +    TE
Sbjct: 201 KEEKEATE 208



 Score = 36.7 bits (81), Expect = 0.020
 Identities = 14/19 (73%), Positives = 16/19 (84%)
 Frame = +1

Query: 676 NTVLTKEYLMKCKPDEESP 732
           NTVLTK Y MKC+PDE+ P
Sbjct: 309 NTVLTKSYKMKCEPDEDDP 327



 Score = 32.3 bits (70), Expect = 0.42
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 626 PISFTLEFYFAPNEYFTIQYLLKS 697
           P+ F LEF+F PN +FT   L KS
Sbjct: 292 PMGFVLEFHFTPNPFFTNTVLTKS 315


>SB_16619| Best HMM Match : Dynamitin (HMM E-Value=1.1)
          Length = 667

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 191 VGMPSLLHEGDL*WPLSFHYGSRHFSTGVALVH 93
           V +PS +HE D   PL F +GS +  T + L H
Sbjct: 207 VPLPSSIHEADDMLPLCFEFGSLNSQTLLMLEH 239


>SB_51137| Best HMM Match : Fibrinogen_C (HMM E-Value=0.23)
          Length = 365

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 349 TYEPNDDECLNPWRDDTEEEEL 414
           TYE  D+ C +PW+D +++ E+
Sbjct: 268 TYERLDNSCTSPWQDVSQKSEV 289


>SB_41567| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +1

Query: 364 DDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDP---NVKGTQTFGTTYS 534
           DD   N   D+ EEEE     +  +++  ++ + D+ ++P + P   N +GT     T S
Sbjct: 19  DDRAHNITADEGEEEEEEEEERVISVSLADDLQLDQEVQPAIQPLCQNDRGTDLIEETPS 78

Query: 535 G 537
           G
Sbjct: 79  G 79


>SB_33233| Best HMM Match : Vicilin_N (HMM E-Value=1)
          Length = 305

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +1

Query: 364 DDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDP---NVKGTQTFGTTYS 534
           DD   N   D+ EEEE     +  +++  ++ + D+ ++P + P   N +GT     T S
Sbjct: 204 DDRAHNITADEGEEEEEEEEERVISVSLADDLQLDQEVQPAIQPLCQNDRGTDLIEETPS 263

Query: 535 G 537
           G
Sbjct: 264 G 264


>SB_56175| Best HMM Match : RRM_1 (HMM E-Value=0.27)
          Length = 601

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 352 YEPNDDECLNPWRDD-TEEEELARAVQNAAITE 447
           +  N D+C+N   +  T + EL R +QNAA TE
Sbjct: 468 HNANSDDCINNRGEPYTTKAELVRILQNAAETE 500


>SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1718

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 18/76 (23%), Positives = 30/76 (39%)
 Frame = +1

Query: 331 ALIVNGTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGT 510
           A+I +    P D   +   +D  + +  A     A I+   ++KD       +D NV  +
Sbjct: 247 AIISDSMRHPEDMSTMRETQDQKQTDPAANGSSEATISNDSDRKDANIRFSDIDKNVNIS 306

Query: 511 QTFGTTYSGMSQCSAK 558
            + G      SQ S K
Sbjct: 307 DSQGENIHVDSQSSKK 322


>SB_12927| Best HMM Match : ATP-synt_A (HMM E-Value=4.3)
          Length = 477

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -3

Query: 411 LFFFSVITPWVETFIIIRFICAIHNKSSLFIKRLVKFFIFAFECMYF 271
           LFF   +T    +F +  FI   +     F K +   F++ F CMYF
Sbjct: 13  LFFLLFLTV---SFHVFMFIVVPYVTKRPFFKNIPAIFMYIFMCMYF 56


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,619,644
Number of Sequences: 59808
Number of extensions: 463317
Number of successful extensions: 1156
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)