Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00146
         (740 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical pr...    43   3e-04
AC024200-13|AAF36004.1|  214|Caenorhabditis elegans Glutathione ...    33   0.28 
Z83224-2|CAE17796.1|  208|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z81125-11|CAE17965.1|  208|Caenorhabditis elegans Hypothetical p...    29   2.6  
Z46829-1|CAA86862.1|  375|Caenorhabditis elegans Hypothetical pr...    29   4.6  

>U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical
           protein D2096.8 protein.
          Length = 316

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +3

Query: 474 YRASNGS-QCKGYPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQCMKTP 629
           Y+A+      KG  DFW    R   +++E ++EHD PIL  L D+     K P
Sbjct: 101 YKAAEADPSAKGIKDFWLTALRTHDLVAEAIEEHDVPILSYLTDVTTAASKDP 153



 Score = 33.1 bits (72), Expect = 0.21
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +2

Query: 608 SAMHEDPISFTLEFYFAPNEYFTIQYLLKS 697
           +A  +DP  F +EF+FA N YF  Q L K+
Sbjct: 147 TAASKDPAGFKIEFHFATNPYFKNQVLTKT 176



 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 676 NTVLTKEYLMKCKPDEESPLE 738
           N VLTK YL+   PD E+PL+
Sbjct: 170 NQVLTKTYLLGFDPDAEAPLQ 190


>AC024200-13|AAF36004.1|  214|Caenorhabditis elegans Glutathione
           s-transferase protein43 protein.
          Length = 214

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
 Frame = +3

Query: 504 GYPDFWYNIFRNVSMLS--EMMQEHDEPILKCLQD-IKVQCMKTP*ASLWNSTLLQMNTS 674
           GY DFW N F N   L+  E++++H      C+ D + +  +  P + ++N+ + +++ S
Sbjct: 125 GYGDFWCNHFVNKGFLALEELLKKHSGKY--CVGDQLTIADINLP-SIIYNAKIYKVDMS 181

Query: 675 QYSTY*RVLNEVQA 716
           +Y T  R+ NE+ A
Sbjct: 182 KYPTITRI-NEILA 194


>Z83224-2|CAE17796.1|  208|Caenorhabditis elegans Hypothetical
           protein F29C6.1a protein.
          Length = 208

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/45 (44%), Positives = 27/45 (60%)
 Frame = +2

Query: 197 NVRRRIRALRTLQKEFVDIGPSFTVKYMHSNANMKNFTSLFMKSE 331
           N+R   +A R  +   V +GPS T  YM S+A  KNFT +F+K E
Sbjct: 100 NLRAWFKANRETKDIKVYMGPSST--YM-SHAYAKNFTPVFVKDE 141


>Z81125-11|CAE17965.1|  208|Caenorhabditis elegans Hypothetical
           protein F29C6.1a protein.
          Length = 208

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/45 (44%), Positives = 27/45 (60%)
 Frame = +2

Query: 197 NVRRRIRALRTLQKEFVDIGPSFTVKYMHSNANMKNFTSLFMKSE 331
           N+R   +A R  +   V +GPS T  YM S+A  KNFT +F+K E
Sbjct: 100 NLRAWFKANRETKDIKVYMGPSST--YM-SHAYAKNFTPVFVKDE 141


>Z46829-1|CAA86862.1|  375|Caenorhabditis elegans Hypothetical
           protein T14B1.1 protein.
          Length = 375

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 379 NPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMD 492
           +P RD+  EE LA+ ++  A   GE+++ +   EP  D
Sbjct: 6   DPGRDEEVEEPLAKKIRVVAQEAGEDEESEMEKEPNAD 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,804,848
Number of Sequences: 27780
Number of extensions: 347046
Number of successful extensions: 1027
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)