Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00146
         (740 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26110.1 68417.m03759 nucleosome assembly protein (NAP), puta...    39   0.003
At2g19480.1 68415.m02277 nucleosome assembly protein (NAP), puta...    39   0.004
At5g56950.1 68418.m07109 nucleosome assembly protein (NAP), puta...    36   0.028
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he...    34   0.11 
At1g18800.1 68414.m02343 nucleosome assembly protein (NAP) famil...    33   0.15 
At3g13782.1 68416.m01740 nucleosome assembly protein (NAP) famil...    33   0.26 
At4g03620.1 68417.m00497 myosin heavy chain-related contains wea...    30   1.9  
At3g48050.2 68416.m05239 bromo-adjacent homology (BAH) domain-co...    29   2.4  
At3g48050.1 68416.m05238 bromo-adjacent homology (BAH) domain-co...    29   2.4  
At5g63930.1 68418.m08028 leucine-rich repeat transmembrane prote...    29   4.3  
At5g66790.1 68418.m08420 protein kinase family protein contains ...    28   5.7  
At2g26530.1 68415.m03183 expressed protein                             28   7.5  

>At4g26110.1 68417.m03759 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 372

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = +3

Query: 501 KGYPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIK 608
           KG P FW    +N  ++SE + E DE  LK L+DIK
Sbjct: 125 KGVPSFWLTALKNNDVISEEVTERDEGALKYLKDIK 160



 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +2

Query: 170 AEAMASLPPNVRRRIRALRTLQKEFVDIGPSF 265
           ++ + +L PNVR+R+ ALR +Q +  ++   F
Sbjct: 41  SDVLENLTPNVRKRVDALRDIQSQHDELEAKF 72



 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 620 EDPISFTLEFYFAPNEYFTIQYLLKS 697
           E+P  F LEF+F  N YF    L KS
Sbjct: 165 EEPKGFKLEFFFDTNPYFKNTVLTKS 190


>At2g19480.1 68415.m02277 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 379

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 18/43 (41%), Positives = 25/43 (58%)
 Frame = +3

Query: 501 KGYPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQCMKTP 629
           KG PDFW    +N  + +E + E DE  LK L+DIK   ++ P
Sbjct: 124 KGVPDFWLIALKNNEITAEEITERDEGALKYLKDIKWSRVEEP 166



 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 620 EDPISFTLEFYFAPNEYFTIQYLLKS 697
           E+P  F LEF+F  N YF    L K+
Sbjct: 164 EEPKGFKLEFFFDQNPYFKNTVLTKT 189


>At5g56950.1 68418.m07109 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 374

 Score = 35.9 bits (79), Expect = 0.028
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +3

Query: 501 KGYPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIK 608
           KG P FW    +N  ++SE + E DE  L  L+DIK
Sbjct: 124 KGVPSFWLTALKNNDVISEEITERDEGALIYLKDIK 159



 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 620 EDPISFTLEFYFAPNEYFTIQYLLKS 697
           E+P  F LEF+F  N YF    L K+
Sbjct: 164 EEPKGFKLEFFFDQNPYFKNTLLTKA 189


>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
           helicase, Mus musculus, PIR:I49731
          Length = 496

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = +1

Query: 391 DDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGTQTFGTTYSGMSQ 546
           DD +EEE    + + +I E EEK D   +E P D N+K   +  T Y+  S+
Sbjct: 43  DDDDEEEAVSELNSLSIKE-EEKPDS-ILEEPEDSNIKAVTSGDTPYTSASR 92


>At1g18800.1 68414.m02343 nucleosome assembly protein (NAP) family
           protein similar to SP|Q01105|SET protein (HLA-DR
           associated protein II) (PHAPII) (Phosphatase 2A
           inhibitor I2PP2A) {Homo sapiens}; contains Pfam profile
           PF00956: Nucleosome assembly protein (NAP)
          Length = 256

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 501 KGYPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQCMK 623
           K  PDFW   F +   L E++ E D+ I K L  + V+  K
Sbjct: 71  KTIPDFWLTAFLSHPALGELLTEEDQKIFKYLSSLDVEDAK 111


>At3g13782.1 68416.m01740 nucleosome assembly protein (NAP) family
           protein similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 329

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 501 KGYPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIK 608
           +G P+FW    +   ML+  + E DE  LK L+DI+
Sbjct: 126 EGVPNFWLIAMKTNEMLANEITERDEAALKYLKDIR 161


>At4g03620.1 68417.m00497 myosin heavy chain-related contains weak
           similarity to Swiss-Prot:P24733 myosin heavy chain,
           striated muscle [Aequipecten irradians]
          Length = 342

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +1

Query: 352 YEPND-DECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNV 501
           +E N+ +E ++ +R   + E+L + VQN A+   +EKK+D     P D NV
Sbjct: 199 HELNEMEELVSDFR--AQNEKLLKKVQNCAVEHNKEKKEDIDGPGPGDNNV 247


>At3g48050.2 68416.m05239 bromo-adjacent homology (BAH)
           domain-containing protein contains Pfam profile PF01426:
           BAH domain
          Length = 1613

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
 Frame = +1

Query: 343 NGTYEPNDDECLNP--WRDDTEEEELARAVQNAA---ITEGEEKKDDKAIEPPMDPNVKG 507
           N +Y PN    LN   W+ + E +++    Q AA   +  G+E+  D         NVKG
Sbjct: 671 NHSYRPNVSSVLNAESWQSN-ELKDILTGSQEAAGSPLVAGDERGGDLKDSDKASGNVKG 729

Query: 508 TQTFGTTY 531
           T + G  +
Sbjct: 730 TSSLGNEF 737


>At3g48050.1 68416.m05238 bromo-adjacent homology (BAH)
           domain-containing protein contains Pfam profile PF01426:
           BAH domain
          Length = 1613

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
 Frame = +1

Query: 343 NGTYEPNDDECLNP--WRDDTEEEELARAVQNAA---ITEGEEKKDDKAIEPPMDPNVKG 507
           N +Y PN    LN   W+ + E +++    Q AA   +  G+E+  D         NVKG
Sbjct: 671 NHSYRPNVSSVLNAESWQSN-ELKDILTGSQEAAGSPLVAGDERGGDLKDSDKASGNVKG 729

Query: 508 TQTFGTTY 531
           T + G  +
Sbjct: 730 TSSLGNEF 737


>At5g63930.1 68418.m08028 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 1102

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 608 SAMHEDPISFTLEFYFAPNEYFTIQYLLKST 700
           SA    P   +L+ YF P E FT Q L+ +T
Sbjct: 771 SAQDGQPSEMSLDIYFPPKEGFTFQDLVAAT 801


>At5g66790.1 68418.m08420 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 622

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/68 (23%), Positives = 31/68 (45%)
 Frame = +1

Query: 334 LIVNGTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGTQ 513
           +++  TY   + +  +  R       L     N+++     K+ +KA +   D N+ GT 
Sbjct: 264 VVLIATYFFRNKQSASSERASIANRLLCELAGNSSVPFYTYKEIEKATDSFSDKNMLGTG 323

Query: 514 TFGTTYSG 537
            +GT Y+G
Sbjct: 324 AYGTVYAG 331


>At2g26530.1 68415.m03183 expressed protein
          Length = 317

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = +2

Query: 236 KEFVDIGPSFTVKYMHSNANMKNFTSLFMKSEXXXXXXXXXXXXXNVSTHGVMTLKKKS 412
           K+F+    +   +  H+  ++K FTSLF K E             +VS H    + KK+
Sbjct: 238 KDFLLFRSASEGRARHNKDSVKTFTSLFRKQEDTKNSSSRGRGSSSVSAHEFHYMSKKA 296


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,708,957
Number of Sequences: 28952
Number of extensions: 316922
Number of successful extensions: 894
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)