Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00145
         (656 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4WZW1 Cluster: Putative uncharacterized protein; n=1; ...    33   8.0  
UniRef50_Q22WS5 Cluster: Putative uncharacterized protein; n=1; ...    33   8.0  

>UniRef50_A4WZW1 Cluster: Putative uncharacterized protein; n=1;
           Rhodobacter sphaeroides ATCC 17025|Rep: Putative
           uncharacterized protein - Rhodobacter sphaeroides ATCC
           17025
          Length = 501

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +1

Query: 31  LFSDYSLIAIRPGISKHLRRTAVGRQPQ*HPEDVVILSAQDPGSPLSMIHP 183
           L +DY L+  R       RR A   +P   PE+VV L+ + PG P + + P
Sbjct: 43  LRADYPLVFGRVETLLDTRRAAGPVEPAIRPEEVVALTVERPGLPANCLEP 93


>UniRef50_Q22WS5 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 445

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 6/118 (5%)
 Frame = +2

Query: 254 GIERINQGIPDIVLIQ----CVAKNISSVLGTFAYVCR*GRCSNCIQIRVNFY--SIEYI 415
           GI  +  G+ + +L+     C+A N     GTF + C   +C+N   + +N +  SI+  
Sbjct: 159 GITGLGFGLANCILLTQLKICLALNKIESFGTFDFACGLTKCTNISTLELNLHGNSIQDK 218

Query: 416 KRLALSTGPVKF*SCYFKKLERQIDMFYSLGCRYIMSNLIKITL*NQ*KIKINLKDSQ 589
               LS+   K  +    KL    +  +  G   +   L K+T  N   +K+NL  ++
Sbjct: 219 GTQGLSSEIAKCINLSHLKLNLAFNNIFQAGAADLGQGLSKLT--NLSTLKLNLDQNK 274


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 556,428,636
Number of Sequences: 1657284
Number of extensions: 10216534
Number of successful extensions: 25024
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 24228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25017
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49586781480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)