Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00145
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos...    29   0.59 
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    27   2.4  
SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce...    27   3.1  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    26   5.5  
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p...    25   9.6  

>SPBC8D2.01 |gsk31||serine/threonine protein kinase
           Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 381

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -2

Query: 319 DVFCYTLYKYNIWNSLIYSFYTFVISR-LNYYHGTGADFLNIKQQSMGESYSTG 161
           D+  YT  + +I N L    Y F + R L Y H TG    +IK Q++   Y TG
Sbjct: 111 DMRWYTRRRKSIPN-LSIKLYAFQLFRALAYLHSTGVCHRDIKPQNLLVDYKTG 163


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +1

Query: 217 LSHDNNLSVKLQRYRKNKSRNSRYCTYTVCSKKHQQ 324
           + H N LS++++      ++   +C Y  C KK+ +
Sbjct: 1   MCHFNELSIEIESKNLRSAKKIFHCPYEECGKKYSR 36


>SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 462

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 307 YTLYKYNIWNSLIYSFYTFVIS 242
           YT YK+  W++ I+S + F +S
Sbjct: 197 YTTYKWIFWSTTIFSGFIFALS 218


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 297 YSV*QKTSAVCLERLRTFAARGAVP 371
           YS  Q     C+++LRTF  +G +P
Sbjct: 100 YSFVQALEEFCIQQLRTFQQQGYIP 124


>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 252

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 164 GLPGSCALNITTSSGCYCGC 105
           G+ GSCA+NI  S+   C C
Sbjct: 78  GICGSCAMNINGSNTLACIC 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,369,878
Number of Sequences: 5004
Number of extensions: 44189
Number of successful extensions: 88
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)