Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00145
         (656 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0952 + 7469812-7470020,7471013-7471448                           29   2.5  
09_04_0316 + 16604928-16605701                                         29   4.3  
07_03_0462 + 18444928-18444999,18446948-18447985,18448015-184488...    28   5.7  
06_03_0747 - 24119049-24119878,24120010-24120096,24120180-241202...    28   5.7  
06_03_0031 + 15692711-15692907,15693744-15693829,15694050-15694126     28   5.7  
11_01_0515 + 4003167-4003229,4003318-4003738,4004224-4004367,400...    28   7.5  
10_07_0157 - 13556708-13556813,13556831-13557001,13559558-135597...    27   9.9  

>01_01_0952 + 7469812-7470020,7471013-7471448
          Length = 214

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -3

Query: 231 IIMGQELTFLTLSSSLWVNHTQRAARVLR--AQYNNIFRVLLRL 106
           ++   E   L+LS S W N T   ++     AQYNN FR++ RL
Sbjct: 154 VVEEAEKLALSLSRSPWANSTNYPSKSAYSIAQYNNPFRIIGRL 197


>09_04_0316 + 16604928-16605701
          Length = 257

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 97  VGRQPQ*HPEDVVILSAQDPGSPLSMIH 180
           VGR  + +   VV +SA DPGSP+  +H
Sbjct: 46  VGRGEEGYHGGVVEISAADPGSPMLTVH 73


>07_03_0462 +
           18444928-18444999,18446948-18447985,18448015-18448845,
           18449112-18449120
          Length = 649

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = -3

Query: 204 LTLSSSLWVNHTQRAARVLRAQYNNIFRVLLRLPPYCSASQMFADARTDGY-QAIIRKKV 28
           L  S+  W   TQ + +V RAQYNNIF        Y   SQ F D   +   +A I   V
Sbjct: 7   LRCSTCAW-KFTQ-SLQVARAQYNNIFCATHMGDWYEKLSQSFRDTANEVLAKADIDPNV 64

Query: 27  ASFLRR 10
             F RR
Sbjct: 65  RCFTRR 70


>06_03_0747 -
           24119049-24119878,24120010-24120096,24120180-24120285,
           24120400-24120593,24120663-24120906,24120982-24121060,
           24121148-24121227,24122181-24122276,24122372-24122443,
           24122534-24122731,24123050-24123252,24123376-24123895
          Length = 902

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 170 LNGLPGSCALNITTSSGCYCGCLPTA 93
           L+GLPG+ +L + T  GC+     TA
Sbjct: 798 LDGLPGTVSLELATRPGCFVAAPTTA 823


>06_03_0031 + 15692711-15692907,15693744-15693829,15694050-15694126
          Length = 119

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -2

Query: 376 AVGTAPLAANVRKRSKHTADVFCYTLYKYN-IWNSLIYSFYTFVI 245
           AVG     A  R    HT DV C+  Y +  I+   I   YTFVI
Sbjct: 75  AVGYTIELALTRGSKAHTGDVLCFCPYGHTPIYPLCIVLTYTFVI 119


>11_01_0515 + 4003167-4003229,4003318-4003738,4004224-4004367,
            4004474-4004556,4004661-4004775,4005309-4005400,
            4005558-4005612,4005689-4005834,4005888-4006001,
            4006149-4006342,4006985-4007112,4008526-4008583,
            4009800-4009876,4010214-4010263,4010336-4010515,
            4010633-4010731,4010816-4011133,4011221-4011281,
            4011693-4012781,4012951-4013005,4013133-4013291,
            4013923-4014442
          Length = 1406

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 22   RGNLFSDYSLIAIRPGISKHLRRTAVGRQPQ*HPEDVVILS 144
            +G  FS+ S +A+ PG    L +T   ++ + HP +V I S
Sbjct: 1051 KGQFFSEISKLAVSPG-ENALDQTQANKEERMHPSNVKIHS 1090


>10_07_0157 -
           13556708-13556813,13556831-13557001,13559558-13559757,
           13559809-13559835
          Length = 167

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 20/58 (34%), Positives = 27/58 (46%)
 Frame = -2

Query: 370 GTAPLAANVRKRSKHTADVFCYTLYKYNIWNSLIYSFYTFVISRLNYYHGTGADFLNI 197
           G +  + N +   K  A   C  LYK N W ++   F    ISRL   H  G++FL I
Sbjct: 107 GESSPSTNEQIMRKDKAGYHC--LYKANCWQNMHECFKNRKISRL---HKKGSNFLEI 159


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,555,195
Number of Sequences: 37544
Number of extensions: 266611
Number of successful extensions: 564
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)