Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00145
         (656 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)                   32   0.47 
SB_28342| Best HMM Match : HAT (HMM E-Value=0.043)                     28   5.8  
SB_40761| Best HMM Match : UPF0020 (HMM E-Value=9.5e-06)               28   7.7  

>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
          Length = 842

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 106 ASLLQCVANVC*CPDGWLSSYNPKKGCLFFKTSE 5
           A++L C+  +C CP G   ++ P KG L F+  E
Sbjct: 49  AAVLSCLCWLCFCPYGMSQAHKPIKGSLVFRLCE 82


>SB_28342| Best HMM Match : HAT (HMM E-Value=0.043)
          Length = 758

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
 Frame = -2

Query: 313 FCYTLYKYNIWNSL------IYSFYTFVISRLNYYHGTG 215
           FCY LY++ + +        I SF+ + + R    HGTG
Sbjct: 675 FCYPLYRFELQHGTEHGTEAIVSFFCYPLYRFELQHGTG 713


>SB_40761| Best HMM Match : UPF0020 (HMM E-Value=9.5e-06)
          Length = 1176

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 331 KHTADVFCYTLYKYNIWNSLIYSF 260
           KH  DV+ Y   +Y  WNS  Y+F
Sbjct: 667 KHYTDVYNYYYEQYRYWNSQGYAF 690


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,329,277
Number of Sequences: 59808
Number of extensions: 327645
Number of successful extensions: 775
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)