Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00145
         (656 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF053067-1|AAC35273.1|  405|Caenorhabditis elegans cyclin D prot...    27   8.9  
AF016668-4|AAO12440.1|  222|Caenorhabditis elegans Hypothetical ...    27   8.9  

>AF053067-1|AAC35273.1|  405|Caenorhabditis elegans cyclin D
           protein.
          Length = 405

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = -2

Query: 319 DVFCYTLYKYNIWNSLIYSFYTFVISRLNYYHGTGADFLNIKQQ 188
           ++   T  ++   +   +SF+ F+ SR+   H T  DF  + Q+
Sbjct: 189 ELLIVTTLQWETESPTAFSFFNFLASRIPQIHNTRGDFQTVVQK 232


>AF016668-4|AAO12440.1|  222|Caenorhabditis elegans Hypothetical
           protein F36H9.4 protein.
          Length = 222

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 97  LQCVANVC*CPDGWLSSYNPK 35
           +QC+ NVC C DG+  + + K
Sbjct: 51  MQCIVNVCQCKDGFFRNKDKK 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,042,188
Number of Sequences: 27780
Number of extensions: 251695
Number of successful extensions: 657
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)