Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00145
         (656 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64816.2 68418.m08154 expressed protein                             29   2.7  
At5g64816.1 68418.m08153 expressed protein                             29   2.7  
At3g22050.1 68416.m02781 receptor-like protein kinase-related co...    28   6.3  
At5g26960.1 68418.m03217 kelch repeat-containing F-box family pr...    27   8.3  
At3g19120.1 68416.m02428 expressed protein                             27   8.3  

>At5g64816.2 68418.m08154 expressed protein
          Length = 130

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 289 CTYTVCSKKHQQCAWN-VCVRLPLGALFQLHTNSS 390
           C  TVC  +HQ   WN +C+R       +L ++SS
Sbjct: 91  CARTVCVNQHQVANWNDICLRRCQSECLKLSSSSS 125


>At5g64816.1 68418.m08153 expressed protein
          Length = 130

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 289 CTYTVCSKKHQQCAWN-VCVRLPLGALFQLHTNSS 390
           C  TVC  +HQ   WN +C+R       +L ++SS
Sbjct: 91  CARTVCVNQHQVANWNDICLRRCQSECLKLSSSSS 125


>At3g22050.1 68416.m02781 receptor-like protein kinase-related
           contains Pfam profile: PF01657 Domain of unknown
           function; weak similarity to receptor-like protein
           kinase homolog RK20-1 (GI:4530126) [Phaseolus vulgaris]
          Length = 258

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -2

Query: 289 NIWNSLIYSFYTFVISRLNYYHGTGADFLNIKQQSMGESYSTGCQ 155
           N+ N  + S Y      L+  HG G D + I  Q  G+S+ + C+
Sbjct: 59  NVLNKNVLS-YDLTSGFLHVSHGEGPDSVTIILQCRGDSFGSNCR 102


>At5g26960.1 68418.m03217 kelch repeat-containing F-box family
           protein predicted proteins, Arabidopsis thaliana and
           Oryza sativa; contains Pfam profiles PF01344: Kelch
           motif, PF00646: F-box domain
          Length = 413

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +2

Query: 278 IPDIVLIQCVAKNISSVLGTFAYVCR 355
           +PD +L++C+++  SS + + A VCR
Sbjct: 47  LPDDLLLECISRVPSSSIPSLAVVCR 72


>At3g19120.1 68416.m02428 expressed protein
          Length = 446

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
 Frame = +1

Query: 241 VKLQRYRKNKSRNSRYCTYTVCS------KKHQQCAWNVCVRLPLGALFQLHTNSS*LLL 402
           VKL+R  K   RN   C Y   +        H++  W+VCV+ P G     H   S  LL
Sbjct: 233 VKLRRRTKLNPRNIYGCKYGYDAVLLQVVADHKKIFWDVCVKAPGGEDDSSHFRDS--LL 290

Query: 403 YR 408
           Y+
Sbjct: 291 YK 292


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,947,378
Number of Sequences: 28952
Number of extensions: 216661
Number of successful extensions: 471
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)