Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00144
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase...   124   1e-29
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d...   121   9e-29
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo...    45   1e-05
SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces pombe...    34   0.018
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p...    30   0.39 
SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr 3...    28   1.6  
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    27   2.8  
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    25   8.5  

>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score =  124 bits (300), Expect = 1e-29
 Identities = 51/92 (55%), Positives = 70/92 (76%)
 Frame = +1

Query: 256 VTSVKPGDHVVPLYVPQCNTCKFCLNPKTNLCQKVRSTQGQGVMPDGTRRFRCKGQELYH 435
           V +V+PGDHV+ LY P+C  CKFC + KTNLC K+R TQG+G+MPDGT RF C+ + L H
Sbjct: 82  VINVRPGDHVILLYTPECKECKFCRSGKTNLCSKIRETQGRGLMPDGTSRFSCRDKTLLH 141

Query: 436 FMGCSTFSQYTVVLEISLCKVAEAVH*IKFVC 531
           +MGCS+FSQYTVV +ISL  ++ +   ++ +C
Sbjct: 142 YMGCSSFSQYTVVADISLVAISHSAP-LRSIC 172



 Score =  106 bits (254), Expect = 4e-24
 Identities = 49/69 (71%), Positives = 55/69 (79%)
 Frame = +2

Query: 14  MSTVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPE 193
           MS  GK I C AAVAW A +PLSIE+I+V PPKA EVRVK+  + VCHTDAYTLSG DPE
Sbjct: 1   MSFEGKTITCKAAVAWGAKEPLSIEDIQVAPPKAHEVRVKVDWSAVCHTDAYTLSGVDPE 60

Query: 194 GVFPVVLGH 220
           G FP+VLGH
Sbjct: 61  GAFPIVLGH 69



 Score = 67.3 bits (157), Expect = 2e-12
 Identities = 33/75 (44%), Positives = 41/75 (54%)
 Frame = +3

Query: 510 PLDKVCLLGCGVPTGYGAALNTAKVEPGSNCAIFXXXXXXXXXXXXXXXXXXNRIIGVDI 689
           PL  +CLLGCGV TG+GA  ++AKVE GS  A+                   +RII +DI
Sbjct: 167 PLRSICLLGCGVTTGFGAVTHSAKVESGSTVAVVGCGCVGLAAMQGAVAAGASRIIAIDI 226

Query: 690 NPDKFEVAKKFGVNE 734
           N DK   AKKFG  +
Sbjct: 227 NADKEVYAKKFGATD 241


>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score =  121 bits (292), Expect = 9e-29
 Identities = 50/81 (61%), Positives = 64/81 (79%)
 Frame = +1

Query: 256 VTSVKPGDHVVPLYVPQCNTCKFCLNPKTNLCQKVRSTQGQGVMPDGTRRFRCKGQELYH 435
           VT+V+ GD V+ LY P+C TCKFC + KTNLC ++R+TQG+G+MPDGT RF C G  L H
Sbjct: 85  VTTVQVGDPVIALYTPECKTCKFCKSGKTNLCGRIRTTQGKGLMPDGTSRFSCNGNTLLH 144

Query: 436 FMGCSTFSQYTVVLEISLCKV 498
           FMGCSTFS+YTVV +IS+  +
Sbjct: 145 FMGCSTFSEYTVVADISVVAI 165



 Score =  109 bits (262), Expect = 4e-25
 Identities = 46/67 (68%), Positives = 55/67 (82%)
 Frame = +2

Query: 20  TVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPEGV 199
           T GK+I C AAVAW+   PLSIE ++V PP+  EVR+KI  +GVCHTDAYTLSGKDPEG+
Sbjct: 6   TAGKIINCKAAVAWQPAAPLSIENVQVFPPRVHEVRIKIVNSGVCHTDAYTLSGKDPEGL 65

Query: 200 FPVVLGH 220
           FPV+LGH
Sbjct: 66  FPVILGH 72



 Score = 68.5 bits (160), Expect = 9e-13
 Identities = 32/78 (41%), Positives = 41/78 (52%)
 Frame = +3

Query: 501 RGCPLDKVCLLGCGVPTGYGAALNTAKVEPGSNCAIFXXXXXXXXXXXXXXXXXXNRIIG 680
           R  PLD VCLLGCG+ TGYGAA  TA ++ G + A+F                   RI G
Sbjct: 167 RLAPLDSVCLLGCGITTGYGAATITADIKEGDSVAVFGLGSVGLAVIQGAVKKRAGRIFG 226

Query: 681 VDINPDKFEVAKKFGVNE 734
           +D+NP+K   A  FG  +
Sbjct: 227 IDVNPEKKNWAMSFGATD 244


>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
           Adh1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 350

 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 28/64 (43%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
 Frame = +2

Query: 38  KCLAAVAWEAGKPLSI--EEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDP-EGVFPV 208
           K LAAV    G P ++  EE+ V  P   EV V I  TGVCHTD + L G  P     P+
Sbjct: 6   KQLAAVFHTHGGPENVKFEEVPVAEPGQDEVLVNIKYTGVCHTDLHALQGDWPLPAKMPL 65

Query: 209 VLGH 220
           + GH
Sbjct: 66  IGGH 69


>SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 325

 Score = 34.3 bits (75), Expect = 0.018
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +2

Query: 77  LSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPEGVFPVVLG 217
           + I+ + +  PK GE+ VKI A  +  +D    +G  P  V+P ++G
Sbjct: 23  IEIQSVPIPQPKNGELLVKIEAAAINPSDLMNATGGFPYTVYPRIVG 69


>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 360

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 256 VTSVKPGDHVVPLYVPQCNTCKFCLNPKTNLC 351
           V+S+KPGD V       C  C +C + + NLC
Sbjct: 80  VSSLKPGDPVAVEPGCVCRLCDYCRSGRYNLC 111


>SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 260

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +3

Query: 669 RIIGVDINPDKFEVAKKFGVN 731
           R++G+D +PD  + A++ G+N
Sbjct: 57  RVVGIDASPDMIKAARELGLN 77


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1250

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +1

Query: 274  GDHVVPLY-VPQCNTCKFCLNPKTNLCQKVRSTQGQGVMPDGTRRFRCKGQEL 429
            G HVV L  V   N C   +  KT    KV   +   + P G+R++ C G  L
Sbjct: 1036 GKHVVRLLQVRDANGCAASIT-KTQPAAKVSVVEMASLAPLGSRQYYCVGDRL 1087


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +2

Query: 38  KCLAAVAWEAGKPL-SIEEIEVDPPKAGEVRVKITATG 148
           K ++ +AWE  KPL + E+I  D   +GE+ V  T +G
Sbjct: 63  KVISCIAWEQ-KPLYASEQITTDISGSGEILVLGTNSG 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,841,749
Number of Sequences: 5004
Number of extensions: 55571
Number of successful extensions: 149
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)