Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00144
         (734 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12420| Best HMM Match : No HMM Matches (HMM E-Value=.)             107   9e-24
SB_38647| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.18 
SB_19057| Best HMM Match : ADH_zinc_N (HMM E-Value=5.9e-13)            31   0.97 
SB_46589| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_37986| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_37040| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)              29   5.2  
SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71)                  29   5.2  
SB_46556| Best HMM Match : CDtoxinA (HMM E-Value=1.1)                  28   6.8  
SB_2653| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.8  

>SB_12420| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score =  107 bits (257), Expect = 9e-24
 Identities = 49/62 (79%), Positives = 52/62 (83%)
 Frame = +2

Query: 35  IKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPEGVFPVVL 214
           I C AAVAWE  KPLSIE IEV PPKA EVR+KI ATGVCHTDAYTLSG DPEG+FP +L
Sbjct: 2   ITCQAAVAWEPKKPLSIETIEVAPPKAHEVRIKILATGVCHTDAYTLSGVDPEGLFPCIL 61

Query: 215 GH 220
           GH
Sbjct: 62  GH 63


>SB_38647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 395

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +1

Query: 256 VTSVKPGDHVVPLYVPQCNTCKFCLNPKTNLCQKVRSTQGQGVMPDG 396
           V +V  GD VV      CNTCK C   + + C+K  +    GV  +G
Sbjct: 120 VKNVSIGDRVVVNPNSSCNTCKACRRGQPHFCEKGGTGSAIGVWKNG 166



 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +2

Query: 119 EVRVKITATGVCHTDAYTLSGKDPEGVFPVVLGH 220
           EV VK+  +G+C  D   L G+ P     VVLGH
Sbjct: 75  EVIVKVAYSGICDRDLQILEGELPAAKC-VVLGH 107


>SB_19057| Best HMM Match : ADH_zinc_N (HMM E-Value=5.9e-13)
          Length = 303

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 256 VTSVKPGDHVVPLYVPQCNTCKFCLNPKTNLCQKV 360
           V+ +K GD V       C TC +C   + NLC K+
Sbjct: 70  VSDLKEGDRVAIEPGTPCRTCSYCKKGRYNLCAKM 104


>SB_46589| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 562

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +2

Query: 56  AWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTL 175
           AW  G  L ++   V P  A  +  +IT TG   T AYTL
Sbjct: 361 AWSFGLKLGLKSQNVGPGPAYLIPARITRTGTDGTPAYTL 400


>SB_37986| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 348

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +1

Query: 256 VTSVKPGDHVVPLYVPQCNTCKFCLNPKTNLCQKVRSTQGQGVMPDG 396
           V  V  GD VV   +  C  C FCL  + +LC+        G+  +G
Sbjct: 72  VQHVSVGDRVVINPLTSCGICDFCLKGQPHLCKVEGKNTAIGIKRNG 118


>SB_37040| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 115

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +3

Query: 21  QSVK*LSAWPQSRGKQASRCPSRRLKWTRQKPVKCALRSRPPESAILTRIH 173
           QS   L+  P +RG Q +    R  KW  + P KC ++ +  E A++ R+H
Sbjct: 3   QSGNALTPLPHTRGIQTNTLLLR--KWAVEAPSKCRMKGQTKE-AVVQRVH 50


>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
          Length = 1903

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -1

Query: 266  TEVTPHRHSPRFRRLHVPVLQETLPQDL-FRRVYTRQYGRLRW 141
            T+ T  RH+   RRL+ P   E L Q+L F +     Y ++ W
Sbjct: 1314 TDKTTKRHNIYIRRLYPPSKPENLKQELIFDKDLENSYQKVHW 1356


>SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71)
          Length = 1281

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +3

Query: 18  QQSVK*LSAWPQSRGKQASRCPSRRLKWTRQKPV-KCALRSRPPESAILTRIHSPE 182
           Q S K  ++ PQ + KQASR     LK    KP  +    SRP ++++ T+   P+
Sbjct: 52  QASRKTKTSKPQDQDKQASRPRQASLKTKTSKPQDQDKQASRPRQASLKTKTSKPQ 107


>SB_46556| Best HMM Match : CDtoxinA (HMM E-Value=1.1)
          Length = 208

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
 Frame = -3

Query: 474 NNCVLTEC*TTHEMVEFLSFTAES----PSAIWHHTLTLSRTNLLAQISFRIQAEFTCVA 307
           + CV +   T HE V F S T        S   H  +T     L   ++FR      CV 
Sbjct: 52  HECVTSRSITLHECVTFRSITLHERMTFRSITLHECVTFRSITLHECVTFRSITLHECVT 111

Query: 306 LWDV 295
            W +
Sbjct: 112 FWSI 115



 Score = 27.9 bits (59), Expect = 9.0
 Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
 Frame = -3

Query: 474 NNCVLTEC*TTHEMVEFLSFTAES----PSAIWHHTLTLSRTNLLAQISFRIQAEFTCVA 307
           + CV     T HE V F S T        S   H  +T     L  +++FR      CV 
Sbjct: 107 HECVTFWSITLHECVTFWSITLHECVTFRSITLHECVTFRNITLHERVTFRSITLHECVT 166

Query: 306 LWDV 295
            W +
Sbjct: 167 FWSI 170


>SB_2653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1298

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 18/60 (30%), Positives = 25/60 (41%)
 Frame = -1

Query: 437  KW*SSCPLQRNRLVPSGITP*P*VERTFWHKLVFGFKQNLHVLHCGTYRGTTWSPGLTEV 258
            +W     +  + LV   I P P +       L FG+  NL+    GTY   TW P +  V
Sbjct: 1070 RWLDKGTISASELVAGCILPLPYLSYRLLRHL-FGYSHNLN----GTYTDATWKPSVERV 1124


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,293,808
Number of Sequences: 59808
Number of extensions: 470246
Number of successful extensions: 1205
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1202
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)