Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00144
         (734 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.3  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.9  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   9.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   9.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.1  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = +3

Query: 111  KPVKCALRSRPPESAILTRIHSPEKIL 191
            + + C LR+  P   +L  +H+  ++L
Sbjct: 1102 RDLPCVLRASTPAPVVLEAVHASRRVL 1128


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 728 DSKFLSYLKLVRVDVNTNNAIGTC 657
           D    +Y KLVR  VNT++ +  C
Sbjct: 34  DDLLSNYNKLVRPVVNTSDVLRVC 57


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 728 DSKFLSYLKLVRVDVNTNNAIGTC 657
           D    +Y KLVR  VNT++ +  C
Sbjct: 34  DDLLSNYNKLVRPVVNTSDVLRVC 57


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 454 FSQYTVVLEISLCKV 498
           + QY  VL +SLCK+
Sbjct: 102 WQQYPWVLGVSLCKI 116


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -2

Query: 562 AP*PVGTPHPSKQTLSNGQP 503
           AP P  +PH S Q    G P
Sbjct: 20  APGPQPSPHQSPQAPQRGSP 39


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 531 ANKLYLMDSLCNFTER 484
           +N  +LMDS+ +F ER
Sbjct: 311 SNARFLMDSMFDFAER 326


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 135 ILTRTSPAFGGSTS 94
           +L R SPAF G++S
Sbjct: 920 LLERASPAFSGTSS 933


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,821
Number of Sequences: 438
Number of extensions: 3710
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)