Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00143
         (748 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.0  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    23   2.6  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   4.5  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    21   7.9  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +3

Query: 261  TTLKKYTTRPNTTDKTV*VHMPTDTRLP 344
            TT +  TTRP TT  T     PT T  P
Sbjct: 1056 TTRRTTTTRPTTTSTTT---RPTTTNWP 1080


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -2

Query: 573 SSGSSFLPCFFVSNTCSPHIWSSSTCFSSTLGKLSSWWKPSR 448
           S+ S  +     +N+ +  IWS ++  S TL +  SW   S+
Sbjct: 199 STSSPTIASATYTNSANSSIWSPASIDSFTLEQHRSWCSSSQ 240


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 34  LCLRRRNPASMFSKLTSSPKKHRS 105
           +C R RN + +      SP+ +RS
Sbjct: 403 VCFRPRNNSILIKNFNDSPESNRS 426


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -2

Query: 72  GKHRCRVSATQTQLRPRREQTQ 7
           GK++ R     T++RP+R+ ++
Sbjct: 240 GKNQQRTGTELTKMRPKRQSSR 261


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,425
Number of Sequences: 336
Number of extensions: 3386
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19923648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)