Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00143
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    27   2.1  
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    27   2.1  
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p...    26   5.0  
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |...    26   5.0  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    26   6.6  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    25   8.7  
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    25   8.7  

>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -3

Query: 107 VLLCFFGLDVNLENIDAGFRRRRHNCDHGENRHNT 3
           +L+ F GL VNL  I A      HN DHG + H++
Sbjct: 454 LLVSFLGLVVNLVGILAF--NHGHNHDHGSHHHHS 486


>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 31  QLCLRRRNPASMFSKLTSSPKKHRS 105
           QL LRR+  A+  SKL+SS   H S
Sbjct: 741 QLLLRRKQGATCLSKLSSSSSSHTS 765


>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 360

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +3

Query: 60  IDVFQIDIEP---EEAQKYLNSPPFTDPQLAGRTAVLP 164
           ID+  +D  P   E AQKY+ + PFT P  A     LP
Sbjct: 195 IDIVAVDASPSRVEFAQKYVGAKPFT-PIAAKENESLP 231


>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
 Frame = +2

Query: 260 DYVEEVYDASQYHGQD-GLGAYAYGYQTPESAKVENRVRSGDVTGSYIYKDGKNDLVKVR 436
           +YV  V    +  G+  G+G Y   +   E+ K+  R  +  V+ + +YK  +N     +
Sbjct: 291 EYVARVKATHENGGETKGIG-YRAPFSLEETRKLVLRTHTTAVSANMLYKLAQNGFHPAK 349

Query: 437 YWSDRDGFHQE--DNLPKVELKQVE 505
           Y+S    F  E  D     E  QVE
Sbjct: 350 YFSIDRVFRNETVDATHLAEFHQVE 374


>SPCC1183.07 |||U3 snoRNP-associated protein
           Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1690

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 610 LPKDYYQQTYKALPSDYYQPQAS 678
           +PK Y  + Y  +PS  Y+PQ S
Sbjct: 788 VPKAYISEEYVPVPSAVYKPQQS 810


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 18/75 (24%), Positives = 36/75 (48%)
 Frame = +2

Query: 224 LLEERKGNRESEDYVEEVYDASQYHGQDGLGAYAYGYQTPESAKVENRVRSGDVTGSYIY 403
           +++E K   +   Y +  Y+ ++   +D   +    Y    + K+ NR++ GDV+ + I 
Sbjct: 339 MVQEEKLLNKQRKYGQN-YEYAKQIAKDKTYSNNLDYLDENAGKLSNRMKRGDVSLAQIS 397

Query: 404 KDGKNDLVKVRYWSD 448
             G  DL K+ +  D
Sbjct: 398 SGG--DLKKINHVLD 410


>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 687 LLFGCLWLVIITWKGFVGLLVI 622
           LLFGCL +V   +  F+GL  +
Sbjct: 49  LLFGCLTIVFSAFASFLGLYFV 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,906,585
Number of Sequences: 5004
Number of extensions: 59016
Number of successful extensions: 207
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)