Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00143
         (748 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-98...    29   3.0  
08_02_0312 + 15650594-15650652,15650725-15650811,15651016-156511...    29   3.9  
07_01_0675 + 5055842-5055950,5056036-5056193,5056276-5057067,505...    29   3.9  
06_01_0675 + 4937309-4937354,4937606-4937718,4937810-4937905,493...    28   6.9  

>02_01_0137 +
           988442-988641,989088-989281,989369-989488,989594-989673,
           990244-990510,990840-992458,992571-993327,993560-995506
          Length = 1727

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 365 RVRSGDVTGSYIYKDGKNDLVKVRYWSDRDGFH 463
           +V  GD TG+ +   G NDL+ +R+  D +  H
Sbjct: 851 QVLDGDSTGNLVVPIGMNDLINLRHLIDHEEVH 883


>08_02_0312 +
           15650594-15650652,15650725-15650811,15651016-15651142,
           15651533-15651712,15652071-15652231,15652338-15652450,
           15652648-15652722,15652823-15652936,15653177-15653244,
           15653336-15653419,15653545-15653598,15653844-15653937,
           15654093-15654166,15654248-15654358,15654443-15654487,
           15654572-15654628,15654711-15654815,15654889-15655005,
           15655301-15655404,15655876-15656041,15656149-15656286
          Length = 710

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +1

Query: 601 LKALPKDYYQQTYKALPSDYYQPQASEQQASVVAHLIASPEKAR 732
           LK  P+D Y +  K   ++ Y    S+QQ    AH  A P   R
Sbjct: 69  LKMTPRDNYNKHKKKTDTESYPKTDSDQQRHKKAHCAAPPANPR 112


>07_01_0675 +
           5055842-5055950,5056036-5056193,5056276-5057067,
           5057544-5057760,5058280-5058449,5058986-5059630
          Length = 696

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 356 VENRVRSGDVTGSYIYKDGKNDLVKVRY 439
           V N V S  +TG Y+Y+ G +  +  RY
Sbjct: 537 VNNNVGSASITGGYVYRSGTDPCLAGRY 564


>06_01_0675 +
           4937309-4937354,4937606-4937718,4937810-4937905,
           4938003-4938059,4938145-4938300,4938402-4938486,
           4938727-4938817,4938896-4939060,4939150-4939345,
           4939593-4939731,4940187-4941874,4942575-4942765,
           4942850-4942994
          Length = 1055

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
 Frame = +3

Query: 63  DVFQIDIEPEEAQKYLNSPPFT---DPQLAGRTAVLPLIKYNDPRFRTVEAG 209
           D   I I    A    NS PFT   +P+ +    V+PL KYN   +  V  G
Sbjct: 243 DSMHIGILAAAAHAAANSSPFTIFYNPRASPSEFVIPLAKYNKALYTQVSLG 294


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,696,685
Number of Sequences: 37544
Number of extensions: 411341
Number of successful extensions: 1173
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)