Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00143
         (748 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical pr...    37   0.013
AC025727-10|AAK66029.1|  707|Caenorhabditis elegans Hypothetical...    30   2.0  
U00037-6|AAA50658.1|  419|Caenorhabditis elegans Osmotic avoidan...    29   2.6  
Z47811-1|CAA87785.3|  201|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z75955-1|CAB00111.2|  796|Caenorhabditis elegans Hypothetical pr...    28   6.1  
AF328908-1|AAK01123.1|  796|Caenorhabditis elegans voltage-gated...    28   6.1  
AF319616-1|AAG49526.1|  796|Caenorhabditis elegans CLC-type chlo...    28   6.1  

>Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical
           protein C30H6.11 protein.
          Length = 460

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 21/72 (29%), Positives = 29/72 (40%)
 Frame = +3

Query: 261 TTLKKYTTRPNTTDKTV*VHMPTDTRLPNLRRSKIASDPETSPARISTRTAKMISSRYVT 440
           TT    TT P TT        PT T     + +   + P T+P   +T T    +++   
Sbjct: 238 TTTPTTTTTPATTTSETTTTTPTTTTQTTTKPTTTTTTPTTTPTTTTTPTTTTTTAKTTK 297

Query: 441 GQTVTVSTRKTT 476
             T T  T KTT
Sbjct: 298 STTTTTKTTKTT 309


>AC025727-10|AAK66029.1|  707|Caenorhabditis elegans Hypothetical
           protein Y73E7A.8 protein.
          Length = 707

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/48 (41%), Positives = 27/48 (56%)
 Frame = +3

Query: 261 TTLKKYTTRPNTTDKTV*VHMPTDTRLPNLRRSKIASDPETSPARIST 404
           TTL+  TTRP TT KT      T TR P  + +K  + P+T+  R+ T
Sbjct: 360 TTLQTTTTRPQTT-KTTTTPQTTTTR-P--QTTKTTTTPQTTTTRLQT 403


>U00037-6|AAA50658.1|  419|Caenorhabditis elegans Osmotic avoidance
           abnormal protein10 protein.
          Length = 419

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 366 ASDPETSPARISTRTAKMISSRYVTGQTVTVST 464
           AS P+TSPA+ +T T  +++ +     T  +ST
Sbjct: 60  ASSPKTSPAKTTTTTTTVVTQKVSNQPTAPIST 92


>Z47811-1|CAA87785.3|  201|Caenorhabditis elegans Hypothetical
           protein K02C4.2 protein.
          Length = 201

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 613 PKDYYQQTYKALPSDYYQPQASEQQASVVAHLIASPEKARPIRAQ 747
           P+D + +T+     +      SEQ  + ++HL  S E   PIRA+
Sbjct: 155 PEDEFFKTFYLCAEEQRFFSKSEQMYACISHLFVSSETEEPIRAR 199


>Z75955-1|CAB00111.2|  796|Caenorhabditis elegans Hypothetical
           protein R07B7.1 protein.
          Length = 796

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = -2

Query: 678 GCLWLVIITWKGFVGLLVIILRKSFESVLRVGLLCSSGSSFLPCF--FVSNTCSPHIWSS 505
           GC+W V+I W G+  +LV I      ++L + +   +G S +P    +++    P +   
Sbjct: 153 GCMWTVMIAWIGYNCVLVTI-----AAILVIYVAPIAGGSGIPQIKCYLNGIAIPEVVRL 207

Query: 504 STCFSSTLG 478
            T  S  +G
Sbjct: 208 KTLVSKAVG 216


>AF328908-1|AAK01123.1|  796|Caenorhabditis elegans voltage-gated
           chloride channelCLH-6 protein.
          Length = 796

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = -2

Query: 678 GCLWLVIITWKGFVGLLVIILRKSFESVLRVGLLCSSGSSFLPCF--FVSNTCSPHIWSS 505
           GC+W V+I W G+  +LV I      ++L + +   +G S +P    +++    P +   
Sbjct: 153 GCMWTVMIAWIGYNCVLVTI-----AAILVIYVAPIAGGSGIPQIKCYLNGIAIPEVVRL 207

Query: 504 STCFSSTLG 478
            T  S  +G
Sbjct: 208 KTLVSKAVG 216


>AF319616-1|AAG49526.1|  796|Caenorhabditis elegans CLC-type
           chloride channel CLH-6 protein.
          Length = 796

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = -2

Query: 678 GCLWLVIITWKGFVGLLVIILRKSFESVLRVGLLCSSGSSFLPCF--FVSNTCSPHIWSS 505
           GC+W V+I W G+  +LV I      ++L + +   +G S +P    +++    P +   
Sbjct: 153 GCMWTVMIAWIGYNCVLVTI-----AAILVIYVAPIAGGSGIPQIKCYLNGIAIPEVVRL 207

Query: 504 STCFSSTLG 478
            T  S  +G
Sbjct: 208 KTLVSKAVG 216


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,197,292
Number of Sequences: 27780
Number of extensions: 337487
Number of successful extensions: 1042
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)