Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00143
         (748 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            25   0.75 
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    22   7.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   7.0  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   7.0  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 25.0 bits (52), Expect = 0.75
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 174 YNDPRFRTVEAGPTLGHYWKNG 239
           YN  RFR +  G  + ++W NG
Sbjct: 388 YNMVRFRNLVKGTKIDNWWDNG 409



 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/42 (21%), Positives = 19/42 (45%)
 Frame = +2

Query: 248 RESEDYVEEVYDASQYHGQDGLGAYAYGYQTPESAKVENRVR 373
           +E  DY  E     +Y+G   +  + Y Y+   + +  N ++
Sbjct: 243 QEVIDYGNEAISKREYNGIGAVIEFKYSYEISNAFRGNNNLK 284


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 332 IRRHMHLDRLVRGIG 288
           + RH H+ RLV  IG
Sbjct: 107 VERHKHIVRLVTAIG 121


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 655 DYYQPQASEQQASVVAHLIASPEKARP 735
           DY  P+     A  + + I SP++ RP
Sbjct: 200 DYVHPKDKATLADQIKNGIVSPQEERP 226


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 655 DYYQPQASEQQASVVAHLIASPEKARP 735
           DY  P+     A  + + I SP++ RP
Sbjct: 195 DYVHPKDKATLADQIKNGIVSPQEERP 221


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,557
Number of Sequences: 438
Number of extensions: 4004
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)